Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 RNU1-82P-201ENST00000390851 165 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 PEX12P1-201ENST00000400284 1048 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.74□□□□□ -1.49
SCN4AP35499 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.74□□□□□ -1.49
SCN4AP35499 RPL19P16-201ENST00000433839 588 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.74□□□□□ -1.49
SCN4AP35499 AC111000.6-201ENST00000514471 709 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.74□□□□□ -1.49
SCN4AP35499 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.74□□□□□ -1.49
SCN4AP35499 AC090948.2-201ENST00000607363 564 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AL023881.1-201ENST00000621088 301 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.74□□□□□ -1.49
SCN4AP35499 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
SCN4AP35499 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
SCN4AP35499 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.73□□□□□ -1.49
SCN4AP35499 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 AL359955.1-201ENST00000455242 3275 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.73□□□□□ -1.49
SCN4AP35499 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.73□□□□□ -1.49
SCN4AP35499 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SCN4AP35499 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.73□□□□□ -1.49
SCN4AP35499 GLUD1P9-201ENST00000420997 1173 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 RPL23AP93-201ENST00000440847 484 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 RPL7AP61-201ENST00000443410 636 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 HSFY6P-201ENST00000445573 403 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 PHBP16-201ENST00000446318 950 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.73□□□□□ -1.49
SCN4AP35499 RN7SL197P-201ENST00000466981 299 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.73□□□□□ -1.49
SCN4AP35499 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.73□□□□□ -1.49
SCN4AP35499 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.73□□□□□ -1.49
SCN4AP35499 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.73□□□□□ -1.49
SCN4AP35499 MIR7853-201ENST00000584820 132 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 AC073091.2-201ENST00000603205 907 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.73□□□□□ -1.49
SCN4AP35499 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.73□□□□□ -1.49
SCN4AP35499 AC243960.7-201ENST00000623532 707 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.73□□□□□ -1.49
SCN4AP35499 STX3-208ENST00000641815 3236 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.73□□□□□ -1.49
SCN4AP35499 TLK1P1-201ENST00000456760 2440 ntBASIC5.73□□□□□ -1.49
SCN4AP35499 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SCN4AP35499 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SCN4AP35499 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
SCN4AP35499 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SCN4AP35499 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.72□□□□□ -1.49
SCN4AP35499 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SCN4AP35499 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
SCN4AP35499 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SCN4AP35499 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SCN4AP35499 RN7SKP280-201ENST00000364196 304 ntBASIC5.72□□□□□ -1.49
SCN4AP35499 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.72□□□□□ -1.49
SCN4AP35499 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.72□□□□□ -1.49
SCN4AP35499 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.72□□□□□ -1.49
SCN4AP35499 SNORA31.9-201ENST00000516429 84 ntBASIC5.72□□□□□ -1.49
SCN4AP35499 AC109635.6-201ENST00000525487 1113 ntBASIC5.72□□□□□ -1.49
SCN4AP35499 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.72□□□□□ -1.49
SCN4AP35499 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.72□□□□□ -1.49
SCN4AP35499 SNX18P1Y-201ENST00000616231 511 ntBASIC5.72□□□□□ -1.49
SCN4AP35499 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SCN4AP35499 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SCN4AP35499 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.72□□□□□ -1.49
SCN4AP35499 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.72□□□□□ -1.49
SCN4AP35499 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.72□□□□□ -1.49
SCN4AP35499 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SCN4AP35499 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.72□□□□□ -1.49
SCN4AP35499 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.72□□□□□ -1.49
SCN4AP35499 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SCN4AP35499 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.72□□□□□ -1.49
SCN4AP35499 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
SCN4AP35499 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SCN4AP35499 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.72□□□□□ -1.49
SCN4AP35499 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SCN4AP35499 AL121657.1-201ENST00000327215 531 ntBASIC5.71□□□□□ -1.49
SCN4AP35499 AC140479.3-201ENST00000418944 1126 ntBASIC5.71□□□□□ -1.49
SCN4AP35499 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.71□□□□□ -1.49
SCN4AP35499 BX119904.3-201ENST00000428194 957 ntBASIC5.71□□□□□ -1.49
SCN4AP35499 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.71□□□□□ -1.49
SCN4AP35499 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.71□□□□□ -1.49
SCN4AP35499 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.71□□□□□ -1.49
SCN4AP35499 MIR2116-201ENST00000517221 80 ntBASIC5.71□□□□□ -1.49
SCN4AP35499 IGLVIV-65-201ENST00000517313 360 ntBASIC5.71□□□□□ -1.49
SCN4AP35499 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.71□□□□□ -1.49
SCN4AP35499 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.71□□□□□ -1.49
SCN4AP35499 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.71□□□□□ -1.49
SCN4AP35499 ARF4P1-201ENST00000605447 541 ntBASIC5.71□□□□□ -1.49
SCN4AP35499 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.71□□□□□ -1.49
SCN4AP35499 AL049536.1-201ENST00000625043 744 ntBASIC5.71□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 180 ms