Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.59□□□□□ -1.51
COL4A5P29400 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A5P29400 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC5.59□□□□□ -1.51
COL4A5P29400 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A5P29400 MIR208A-201ENST00000362287 71 ntBASIC5.59□□□□□ -1.52
COL4A5P29400 RNU1-85P-201ENST00000364127 164 ntBASIC5.59□□□□□ -1.52
COL4A5P29400 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
COL4A5P29400 RPS26P8-201ENST00000393490 348 ntBASIC5.59□□□□□ -1.52
COL4A5P29400 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.59□□□□□ -1.52
COL4A5P29400 MTND4LP17-201ENST00000414607 293 ntBASIC5.59□□□□□ -1.52
COL4A5P29400 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
COL4A5P29400 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A5P29400 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.59□□□□□ -1.52
COL4A5P29400 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.59□□□□□ -1.52
COL4A5P29400 MIR4444-1-201ENST00000581696 74 ntBASIC5.59□□□□□ -1.52
COL4A5P29400 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A5P29400 MIR4444-2-201ENST00000584390 74 ntBASIC5.59□□□□□ -1.52
COL4A5P29400 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A5P29400 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A5P29400 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A5P29400 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A5P29400 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A5P29400 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A5P29400 CYP1D1P-201ENST00000416662 1433 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A5P29400 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL4A5P29400 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A5P29400 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A5P29400 AL583835.1-201ENST00000399570 407 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 AL139095.3-201ENST00000419672 1203 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 AL451139.1-201ENST00000434718 346 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A5P29400 CR383656.1-201ENST00000484916 377 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A5P29400 SNORA67.7-201ENST00000516664 135 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.58□□□□□ -1.52
COL4A5P29400 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A5P29400 FKBP1BP1-201ENST00000553366 325 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 PSMB7P1-201ENST00000556349 514 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A5P29400 RN7SL703P-201ENST00000578485 302 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 RPL7P50-201ENST00000600588 727 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 AC020634.1-201ENST00000608701 549 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 AP005019.3-201ENST00000620418 560 ntBASIC5.58□□□□□ -1.52
COL4A5P29400 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A5P29400 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
COL4A5P29400 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
COL4A5P29400 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A5P29400 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.58□□□□□ -1.52
COL4A5P29400 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A5P29400 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A5P29400 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A5P29400 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A5P29400 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 SPRR2C-201ENST00000290702 219 ntBASIC5.57□□□□□ -1.52
COL4A5P29400 RPS27AP11-201ENST00000402798 447 ntBASIC5.57□□□□□ -1.52
COL4A5P29400 RNA5SP44-201ENST00000410446 133 ntBASIC5.57□□□□□ -1.52
COL4A5P29400 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.57□□□□□ -1.52
COL4A5P29400 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
COL4A5P29400 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A5P29400 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
COL4A5P29400 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A5P29400 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.57□□□□□ -1.52
COL4A5P29400 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
COL4A5P29400 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 AP005432.1-201ENST00000580891 3485 ntBASIC5.57□□□□□ -1.52
COL4A5P29400 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A5P29400 AL031119.1-201ENST00000404707 1879 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 RNU1-94P-201ENST00000362627 173 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 AMZ2P2-201ENST00000406819 1057 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.56□□□□□ -1.52
COL4A5P29400 DHFRP3-201ENST00000455595 559 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 Y_RNA.719-201ENST00000517156 106 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A5P29400 HNRNPRP2-201ENST00000528421 743 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.56□□□□□ -1.52
COL4A5P29400 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.56□□□□□ -1.52
COL4A5P29400 AGGF1P9-201ENST00000561884 913 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.56□□□□□ -1.52
COL4A5P29400 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.56□□□□□ -1.52
COL4A5P29400 AC099676.1-201ENST00000608886 657 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 AC023043.4-201ENST00000612081 449 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 BX005214.3-202ENST00000619809 325 ntBASIC5.56□□□□□ -1.52
COL4A5P29400 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.56□□□□□ -1.52
COL4A5P29400 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A5P29400 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC5.56□□□□□ -1.52
COL4A5P29400 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A5P29400 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A5P29400 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.56□□□□□ -1.52
COL4A5P29400 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A5P29400 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A5P29400 AC239868.2-201ENST00000564237 4527 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms