Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHOX2O60902 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC4.89□□□□□ -1.63
SHOX2O60902 SCARNA10-201ENST00000459255 330 ntBASIC4.89□□□□□ -1.63
SHOX2O60902 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.89□□□□□ -1.63
SHOX2O60902 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.89□□□□□ -1.63
SHOX2O60902 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC4.89□□□□□ -1.63
SHOX2O60902 AC108022.1-201ENST00000493466 478 ntBASIC4.89□□□□□ -1.63
SHOX2O60902 AC008694.2-201ENST00000517591 306 ntBASIC4.89□□□□□ -1.63
SHOX2O60902 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC4.89□□□□□ -1.63
SHOX2O60902 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHOX2O60902 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.89□□□□□ -1.63
SHOX2O60902 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHOX2O60902 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.89□□□□□ -1.63
SHOX2O60902 AC027455.1-201ENST00000574104 594 ntBASIC4.89□□□□□ -1.63
SHOX2O60902 RBM22P1-201ENST00000578589 1214 ntBASIC4.89□□□□□ -1.63
SHOX2O60902 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.89□□□□□ -1.63
SHOX2O60902 AF117829.2-201ENST00000619538 361 ntBASIC4.89□□□□□ -1.63
SHOX2O60902 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.89□□□□□ -1.63
SHOX2O60902 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHOX2O60902 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHOX2O60902 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHOX2O60902 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHOX2O60902 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHOX2O60902 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHOX2O60902 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.88□□□□□ -1.63
SHOX2O60902 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SHOX2O60902 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHOX2O60902 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHOX2O60902 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHOX2O60902 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHOX2O60902 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHOX2O60902 SNORA74A-201ENST00000364089 198 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 FABP12P1-201ENST00000401911 322 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AL645733.1-201ENST00000402250 217 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 NUDT19P3-201ENST00000404698 555 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 MIR1182-201ENST00000408363 97 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 MIR1178-201ENST00000408396 91 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 RNA5SP178-201ENST00000410380 128 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AL596448.1-201ENST00000415024 392 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.88□□□□□ -1.63
SHOX2O60902 RPS3P2-201ENST00000421346 701 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 RPL7P57-201ENST00000423238 740 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC4.88□□□□□ -1.63
SHOX2O60902 AL450263.2-201ENST00000439400 589 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AC007386.1-201ENST00000455212 582 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 PSMC1P13-201ENST00000458195 985 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC4.88□□□□□ -1.63
SHOX2O60902 AL136038.1-201ENST00000497246 351 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.88□□□□□ -1.63
SHOX2O60902 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.88□□□□□ -1.63
SHOX2O60902 AC138866.2-201ENST00000508650 584 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 HMGB3P13-201ENST00000511263 607 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 RPL7L1P4-201ENST00000513004 707 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 HIGD1AP5-201ENST00000529959 259 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.88□□□□□ -1.63
SHOX2O60902 BLZF2P-201ENST00000553776 1130 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.88□□□□□ -1.63
SHOX2O60902 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.88□□□□□ -1.63
SHOX2O60902 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC4.88□□□□□ -1.63
SHOX2O60902 MIR3176-201ENST00000582210 90 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AC008759.1-201ENST00000589783 983 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.88□□□□□ -1.63
SHOX2O60902 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.88□□□□□ -1.63
SHOX2O60902 AC074276.2-201ENST00000619891 348 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.88□□□□□ -1.63
SHOX2O60902 AC012414.7-202ENST00000622705 1090 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 AL359757.1-201ENST00000623176 255 ntBASIC4.88□□□□□ -1.63
SHOX2O60902 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SHOX2O60902 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHOX2O60902 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHOX2O60902 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.88□□□□□ -1.63
SHOX2O60902 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.88□□□□□ -1.63
SHOX2O60902 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHOX2O60902 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SHOX2O60902 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.87□□□□□ -1.63
SHOX2O60902 AC011503.2-201ENST00000594230 1500 ntBASIC4.87□□□□□ -1.63
SHOX2O60902 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SHOX2O60902 LINC01355-201ENST00000566551 5444 ntBASIC4.87□□□□□ -1.63
SHOX2O60902 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SHOX2O60902 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.87□□□□□ -1.63
SHOX2O60902 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SHOX2O60902 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SHOX2O60902 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.87□□□□□ -1.63
SHOX2O60902 RNA5SP46-201ENST00000362370 120 ntBASIC4.87□□□□□ -1.63
SHOX2O60902 RN7SKP103-201ENST00000363848 320 ntBASIC4.87□□□□□ -1.63
SHOX2O60902 SNORA70-201ENST00000384436 135 ntBASIC4.87□□□□□ -1.63
SHOX2O60902 RPS12P5-201ENST00000423449 371 ntBASIC4.87□□□□□ -1.63
SHOX2O60902 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.87□□□□□ -1.63
SHOX2O60902 AL390119.1-201ENST00000440329 312 ntBASIC4.87□□□□□ -1.63
SHOX2O60902 UBE2V2P4-201ENST00000447495 259 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms