Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 PVALB-201ENST00000216200 595 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 SLC36A2-201ENST00000335244 3421 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 Y_RNA.67-201ENST00000362870 100 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC104297.1-201ENST00000393779 870 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 CREM-214ENST00000395887 849 ntTSL 5 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RPS4XP8-201ENST00000402039 771 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 MIR1266-201ENST00000408125 84 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 SLC3A1-204ENST00000409380 2424 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RN7SKP268-201ENST00000411107 316 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RPL36P1-201ENST00000419720 225 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 ELOCP4-201ENST00000420090 333 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC006509.1-201ENST00000420788 634 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 APP-209ENST00000440126 2846 ntTSL 2 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC023274.2-201ENST00000445264 521 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RNU7-136P-201ENST00000458819 69 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 SUPT7L-205ENST00000464789 2664 ntAPPRIS ALT1 TSL 5 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 MYL6P4-201ENST00000477911 453 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RPS15AP36-201ENST00000492022 382 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC233724.1-201ENST00000503894 233 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RNU6-835P-201ENST00000516974 104 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RNU6-201P-201ENST00000517100 61 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 ASB8-207ENST00000536953 923 ntTSL 2 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC016152.1-201ENST00000548344 521 ntTSL 3 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC034105.3-201ENST00000565294 442 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 ADGRF5P1-202ENST00000590130 980 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AL133255.1-201ENST00000606374 441 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 MID1-212ENST00000616003 1926 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 MIR6849-201ENST00000618543 69 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC008121.3-201ENST00000618726 433 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AC078909.2-201ENST00000620584 398 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 RMST_7.1-201ENST00000621935 268 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 AL355480.1-201ENST00000629041 99 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 OR7E161P-202ENST00000641994 1033 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.19
LIMD1Q9UGP4 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
LIMD1Q9UGP4 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC7.65□□□□□ -1.19
LIMD1Q9UGP4 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 NBPF15-206ENST00000581897 4272 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 NPFFR2-204ENST00000395999 1866 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 MED23-209ENST00000539158 1636 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC020904.2-202ENST00000614660 1401 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 RNU6-289P-201ENST00000364093 107 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 SNORA70.5-201ENST00000365519 135 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 ADIG-201ENST00000373348 430 ntTSL 2 BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 MIR498-201ENST00000385134 124 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AL122016.1-201ENST00000403365 367 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AL033519.1-201ENST00000407266 307 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 RNU2-6P-201ENST00000411404 190 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 RAB28P1-201ENST00000411517 641 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 ALDH7A1P4-201ENST00000412255 178 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 MTCO2P5-201ENST00000422621 426 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 OR2B7P-201ENST00000429302 934 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC236972.2-201ENST00000434979 310 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 RSU1P2-202ENST00000437884 485 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC234771.4-201ENST00000441416 730 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 FUNDC2P2-202ENST00000443452 493 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC073909.1-201ENST00000447112 999 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 AC026427.2-201ENST00000506228 536 ntBASIC7.64□□□□□ -1.19
LIMD1Q9UGP4 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC7.64□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms