Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 SYT14P1-201ENST00000481459 721 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC078899.1-201ENST00000521432 1185 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL359219.2-201ENST00000555184 348 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 BNIP3P22-201ENST00000593399 556 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC006115.2-201ENST00000596823 202 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC234771.5-201ENST00000600161 514 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC084373.1-201ENST00000603311 235 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL139022.2-201ENST00000606934 443 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC000068.2-201ENST00000608816 460 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MIR8084-201ENST00000614105 89 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL138955.1-201ENST00000622881 1040 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL590396.2-201ENST00000636511 1041 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL034546.1-201ENST00000623740 3693 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL603750.1-201ENST00000624216 1717 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC114947.2-201ENST00000565748 2125 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 DUTP5-201ENST00000406790 469 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 U3.36-201ENST00000408418 213 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 RNU4-74P-201ENST00000411280 161 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC079809.1-201ENST00000415468 276 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 OR5M12P-201ENST00000423388 929 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 FAM96AP1-201ENST00000430879 482 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC138761.5-201ENST00000433967 325 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 RNFT1P2-201ENST00000443064 757 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC011753.3-201ENST00000443436 406 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 RBMY2TP-201ENST00000451162 947 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC116562.1-201ENST00000485355 781 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 C1GALT1P3-201ENST00000522049 819 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AL121594.2-201ENST00000541658 472 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC209154.1-201ENST00000582156 337 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC060780.2-201ENST00000589047 198 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC079880.2-201ENST00000603790 1213 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC073137.1-201ENST00000605636 634 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC034236.3-201ENST00000605999 461 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC004241.3-201ENST00000611728 517 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC022306.3-201ENST00000619930 550 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AL049777.1-201ENST00000622740 518 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC068880.4-201ENST00000623082 495 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AL121950.1-201ENST00000624993 2077 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 AC133552.1-201ENST00000569988 4007 ntBASIC5.3□□□□□ -1.56
COL28A1Q2UY09 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.3□□□□□ -1.56
COL28A1Q2UY09 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms