Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 AC118273.2-201ENST00000532092 465 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 ADI1P3-201ENST00000549509 470 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC6.18□□□□□ -1.42
RNF4P78317 AC106785.4-201ENST00000569492 412 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.18□□□□□ -1.42
RNF4P78317 AC020914.6-201ENST00000594327 272 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC6.18□□□□□ -1.42
RNF4P78317 AC107214.2-201ENST00000608204 634 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AC007014.2-201ENST00000615581 479 ntBASIC6.18□□□□□ -1.42
RNF4P78317 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.18□□□□□ -1.42
RNF4P78317 AL356274.1-201ENST00000617064 410 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AL354718.1-201ENST00000619764 589 ntBASIC6.18□□□□□ -1.42
RNF4P78317 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 AP000550.3-201ENST00000637734 379 ntBASIC6.18□□□□□ -1.42
RNF4P78317 OR52B5P-202ENST00000641118 1110 ntBASIC6.18□□□□□ -1.42
RNF4P78317 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 AC245100.2-201ENST00000454544 1679 ntBASIC6.17□□□□□ -1.42
RNF4P78317 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.17□□□□□ -1.42
RNF4P78317 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 RPL11P4-201ENST00000332269 436 ntBASIC6.17□□□□□ -1.42
RNF4P78317 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 RNU6-797P-201ENST00000363101 109 ntBASIC6.17□□□□□ -1.42
RNF4P78317 RN7SKP226-201ENST00000364912 300 ntBASIC6.17□□□□□ -1.42
RNF4P78317 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 MIR320B1-201ENST00000390209 79 ntBASIC6.17□□□□□ -1.42
RNF4P78317 RPL17P50-201ENST00000396131 546 ntBASIC6.17□□□□□ -1.42
RNF4P78317 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
RNF4P78317 RN7SKP56-201ENST00000410513 331 ntBASIC6.17□□□□□ -1.42
RNF4P78317 AC016831.2-201ENST00000417179 352 ntBASIC6.17□□□□□ -1.42
RNF4P78317 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 RPL21P32-201ENST00000419877 477 ntBASIC6.17□□□□□ -1.42
RNF4P78317 USP9YP18-201ENST00000425912 695 ntBASIC6.17□□□□□ -1.42
RNF4P78317 PCBP2P1-201ENST00000437262 977 ntBASIC6.17□□□□□ -1.42
RNF4P78317 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AL031681.1-201ENST00000443304 400 ntBASIC6.17□□□□□ -1.42
RNF4P78317 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 RN7SL393P-201ENST00000463588 296 ntBASIC6.17□□□□□ -1.42
RNF4P78317 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AC090013.1-201ENST00000485147 480 ntBASIC6.17□□□□□ -1.42
RNF4P78317 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC6.17□□□□□ -1.42
RNF4P78317 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.17□□□□□ -1.42
RNF4P78317 AC048346.1-201ENST00000510247 144 ntBASIC6.17□□□□□ -1.42
RNF4P78317 ATG10-208ENST00000513634 618 ntTSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AC092709.1-201ENST00000521355 1045 ntBASIC6.17□□□□□ -1.42
RNF4P78317 AP001189.2-201ENST00000527320 189 ntBASIC6.17□□□□□ -1.42
RNF4P78317 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 AC137768.1-201ENST00000549998 553 ntBASIC6.17□□□□□ -1.42
RNF4P78317 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.17□□□□□ -1.42
RNF4P78317 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC6.17□□□□□ -1.42
RNF4P78317 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC6.17□□□□□ -1.42
RNF4P78317 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.17□□□□□ -1.42
RNF4P78317 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.17□□□□□ -1.42
RNF4P78317 AC005084.1-201ENST00000605160 304 ntBASIC6.17□□□□□ -1.42
RNF4P78317 HTR1DP1-201ENST00000616500 888 ntBASIC6.17□□□□□ -1.42
RNF4P78317 OR1N1-202ENST00000619659 939 ntBASIC6.17□□□□□ -1.42
RNF4P78317 MIR6813-201ENST00000621638 56 ntBASIC6.17□□□□□ -1.42
RNF4P78317 AC018692.2-201ENST00000624130 348 ntBASIC6.17□□□□□ -1.42
RNF4P78317 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.17□□□□□ -1.42
RNF4P78317 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
RNF4P78317 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
RNF4P78317 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms