Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AP005639.1-201ENST00000526939 192 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.74□□□□□ -1.33
LIG3P49916 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC6.74□□□□□ -1.33
LIG3P49916 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 AC091805.2-201ENST00000603848 235 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AP003973.1-201ENST00000604639 691 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AL390877.1-201ENST00000605704 214 ntBASIC6.74□□□□□ -1.33
LIG3P49916 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.74□□□□□ -1.33
LIG3P49916 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AC026368.1-201ENST00000614934 690 ntBASIC6.74□□□□□ -1.33
LIG3P49916 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.74□□□□□ -1.33
LIG3P49916 AL354718.1-201ENST00000619764 589 ntBASIC6.74□□□□□ -1.33
LIG3P49916 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
LIG3P49916 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC6.74□□□□□ -1.33
LIG3P49916 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 AP002512.4-202ENST00000641599 4530 ntBASIC6.74□□□□□ -1.33
LIG3P49916 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 ARHGAP42P1-201ENST00000507474 1976 ntBASIC6.74□□□□□ -1.33
LIG3P49916 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 RACGAP1P-201ENST00000550663 1879 ntBASIC6.74□□□□□ -1.33
LIG3P49916 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.74□□□□□ -1.33
LIG3P49916 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.73□□□□□ -1.33
LIG3P49916 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIG3P49916 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
LIG3P49916 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC6.73□□□□□ -1.33
LIG3P49916 AC119674.1-213ENST00000641177 1386 ntBASIC6.73□□□□□ -1.33
LIG3P49916 CASC19-248ENST00000641674 1356 ntBASIC6.73□□□□□ -1.33
LIG3P49916 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIG3P49916 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIG3P49916 RNA5SP65-201ENST00000363166 119 ntBASIC6.73□□□□□ -1.33
LIG3P49916 RNU4-91P-201ENST00000364778 135 ntBASIC6.73□□□□□ -1.33
LIG3P49916 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIG3P49916 RNU6-1042P-201ENST00000384204 107 ntBASIC6.73□□□□□ -1.33
LIG3P49916 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIG3P49916 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.73□□□□□ -1.33
LIG3P49916 AL359694.1-201ENST00000403247 604 ntBASIC6.73□□□□□ -1.33
LIG3P49916 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIG3P49916 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC6.73□□□□□ -1.33
LIG3P49916 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 EIF1P1-201ENST00000421436 341 ntBASIC6.73□□□□□ -1.33
LIG3P49916 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC6.73□□□□□ -1.33
LIG3P49916 RPL31P54-201ENST00000429803 370 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC6.73□□□□□ -1.33
LIG3P49916 PPIAP17-201ENST00000438507 471 ntBASIC6.73□□□□□ -1.33
LIG3P49916 RPL12P49-201ENST00000441100 121 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AL031681.1-201ENST00000443304 400 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AC023271.1-201ENST00000445936 1090 ntBASIC6.73□□□□□ -1.33
LIG3P49916 REG1CP-206ENST00000447469 496 ntBASIC6.73□□□□□ -1.33
LIG3P49916 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.73□□□□□ -1.33
LIG3P49916 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.73□□□□□ -1.33
LIG3P49916 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
LIG3P49916 MARK2P8-201ENST00000476069 952 ntBASIC6.73□□□□□ -1.33
LIG3P49916 CR383656.1-201ENST00000484916 377 ntBASIC6.73□□□□□ -1.33
LIG3P49916 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC6.73□□□□□ -1.33
LIG3P49916 SETP14-201ENST00000497538 873 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AC006499.4-201ENST00000510947 694 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 AP003392.2-201ENST00000527269 208 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC6.73□□□□□ -1.33
LIG3P49916 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC6.73□□□□□ -1.33
LIG3P49916 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIG3P49916 AC037479.1-201ENST00000558361 625 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.73□□□□□ -1.33
LIG3P49916 ANP32BP1-202ENST00000568553 737 ntBASIC6.73□□□□□ -1.33
LIG3P49916 BPTFP1-201ENST00000579209 492 ntBASIC6.73□□□□□ -1.33
LIG3P49916 RPL29P33-201ENST00000587474 316 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AL078623.1-201ENST00000602702 907 ntBASIC6.73□□□□□ -1.33
LIG3P49916 HNRNPA3P9-201ENST00000604913 979 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AL109618.2-201ENST00000605527 211 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AC126118.1-201ENST00000607744 628 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AC091768.1-201ENST00000609258 930 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AC106028.5-201ENST00000610332 395 ntBASIC6.73□□□□□ -1.33
LIG3P49916 AC024941.1-201ENST00000612250 334 ntBASIC6.73□□□□□ -1.33
LIG3P49916 MIR6503-201ENST00000622884 86 ntBASIC6.73□□□□□ -1.33
LIG3P49916 Z97989.1-201ENST00000531702 2421 ntBASIC6.73□□□□□ -1.33
LIG3P49916 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.73□□□□□ -1.33
LIG3P49916 AC096992.2-201ENST00000609553 1684 ntBASIC6.73□□□□□ -1.33
LIG3P49916 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
LIG3P49916 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIG3P49916 AL731532.1-201ENST00000623972 4236 ntBASIC6.73□□□□□ -1.33
LIG3P49916 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms