Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 VN1R51P-201ENST00000411675 945 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXA1P49639 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXA1P49639 AC093422.3-201ENST00000428506 305 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 RPS7P2-201ENST00000435134 607 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 RPL12P49-201ENST00000441100 121 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 HMGB1P7-201ENST00000450921 612 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 PRPF38AP1-201ENST00000451976 933 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC073476.1-201ENST00000452854 407 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 PSAT1P4-201ENST00000466500 526 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 RPS17P11-201ENST00000474297 293 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 AC068587.2-201ENST00000478386 781 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 RPL29P23-201ENST00000486188 442 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 RPS27AP16-201ENST00000492222 470 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC098862.1-201ENST00000504991 413 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AL158068.1-201ENST00000506116 616 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.58□□□□□ -1.68
HOXA1P49639 HPRT1P1-201ENST00000509498 657 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 TCP11X3P-202ENST00000514289 1254 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC091163.3-201ENST00000518269 1144 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 WBP1LP3-201ENST00000523033 208 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AP003396.4-201ENST00000527574 265 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXA1P49639 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 AC137627.1-201ENST00000545761 289 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC008126.1-201ENST00000549019 480 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 CYB5AP5-201ENST00000549779 389 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXA1P49639 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXA1P49639 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 MTND3P12-201ENST00000559068 328 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXA1P49639 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 DHFRP1-201ENST00000579682 559 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 MIR4701-201ENST00000583094 63 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXA1P49639 AC068020.1-201ENST00000594215 661 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 SNX6P1-201ENST00000601728 1224 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC130352.1-201ENST00000602979 661 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXA1P49639 AC090607.5-201ENST00000615692 224 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 AC009159.2-201ENST00000617603 606 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 AC093875.1-201ENST00000623688 504 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 AL359715.3-201ENST00000569267 2123 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXA1P49639 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXA1P49639 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
HOXA1P49639 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 OR4F13P-202ENST00000560066 2054 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 MFSD8-213ENST00000641134 1327 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 OR10J6P-201ENST00000289731 930 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXA1P49639 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
HOXA1P49639 RN7SKP250-201ENST00000363924 321 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 MT-TP-201ENST00000387461 68 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 AL121834.1-202ENST00000404494 277 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 RNA5SP198-201ENST00000410376 127 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 RN7SKP125-201ENST00000410481 302 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AC096921.1-201ENST00000411661 375 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AL035422.1-201ENST00000414193 397 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 RPL35AP3-201ENST00000414680 288 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AC073136.2-201ENST00000417282 849 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AC008173.1-201ENST00000418901 264 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXA1P49639 AL139158.1-201ENST00000424719 340 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 LINC02210-201ENST00000444561 288 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms