Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 FGG-201ENST00000336098 1659 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 OR52B1P-201ENST00000316506 909 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC008549.2-201ENST00000333482 706 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 SNORA73.1-201ENST00000363107 205 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AL672167.2-201ENST00000377164 879 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC013268.2-201ENST00000420753 337 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RNU7-157P-201ENST00000459600 66 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RN7SL517P-201ENST00000462240 305 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC010469.1-201ENST00000463864 576 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RN7SL799P-201ENST00000475891 298 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RPS4XP20-201ENST00000505751 772 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 GTF2F2P1-201ENST00000511083 675 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RNU6-941P-201ENST00000516346 108 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 NANOGNBP2-201ENST00000544753 553 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC005520.3-201ENST00000602874 370 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AL138895.2-201ENST00000603019 178 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC015813.4-201ENST00000610469 179 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 SNX18P1Y-201ENST00000616231 511 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC004232.3-201ENST00000622977 525 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 DDX18P5-201ENST00000534547 1306 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 Z98755.1-201ENST00000407015 1384 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AP000542.2-201ENST00000623199 6179 ntBASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC245100.2-201ENST00000454544 1679 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 RNU6-891P-201ENST00000384280 111 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 MIR195-201ENST00000385194 87 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 VDAC1P9-201ENST00000412766 841 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC093655.2-201ENST00000425735 631 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 CLNS1AP1-201ENST00000435954 682 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 HMGB1P4-201ENST00000455362 567 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 RPL7P45-201ENST00000455851 743 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 Z92846.1-201ENST00000456203 268 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 OR51K1P-201ENST00000510214 950 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 APOBEC3AP1-201ENST00000511396 287 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 ATP5J2P6-201ENST00000565203 266 ntBASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC28BQ9BUN5 AL354696.1-201ENST00000614652 497 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms