Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC092570.3-201ENST00000420113 693 ntBASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 AC073052.1-201ENST00000440417 714 ntBASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 AC012339.2-201ENST00000523996 453 ntBASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 AL049779.2-201ENST00000553847 315 ntBASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 AC015914.2-201ENST00000618167 288 ntBASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 MIR6837-201ENST00000620884 64 ntBASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 CASC19-264ENST00000641912 1184 ntBASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.8□□□□□ -1.64
CLHC1Q8NHS4 MTCO1P22-201ENST00000604619 1360 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 RNA5SP435-201ENST00000364044 108 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 U3.25-201ENST00000391209 220 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 LRRC37BP1-201ENST00000398851 714 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 QRSL1P2-201ENST00000418582 964 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 OR2AH1P-201ENST00000425717 928 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 RAB9AP5-201ENST00000437794 597 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 AL450023.3-201ENST00000440592 271 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 SPRYD7P1-201ENST00000443861 570 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 RAB9AP2-201ENST00000443911 597 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 HMGB1P4-201ENST00000455362 567 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 RN7SL174P-201ENST00000475578 289 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 RPL7P51-201ENST00000490532 749 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 RN7SL441P-201ENST00000492388 296 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 BX510359.5-201ENST00000515651 304 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 PDCD5P1-201ENST00000543528 309 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 OR11J2P-201ENST00000555298 907 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 VN1R81P-201ENST00000602085 372 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 NXF4-202ENST00000416098 1465 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 CASC19-204ENST00000641001 2055 ntBASIC4.79□□□□□ -1.64
CLHC1Q8NHS4 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 PANDAR-201ENST00000629595 1506 ntBASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 ASNSP1-201ENST00000518311 1939 ntBASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 RPL10P10-201ENST00000403509 664 ntBASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 NPM1P4-201ENST00000414095 812 ntBASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 AC245047.2-201ENST00000441060 530 ntBASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 TCEA1P1-201ENST00000449716 880 ntBASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 AC011225.1-201ENST00000457751 369 ntBASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 APOOP2-201ENST00000461561 539 ntBASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 HMGB3P16-201ENST00000508037 287 ntBASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.78□□□□□ -1.64
CLHC1Q8NHS4 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms