Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 OR13C1P-202ENST00000641378 2919 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RNA5SP394-201ENST00000364216 119 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RNU4-40P-201ENST00000364351 143 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 U3.25-201ENST00000391209 220 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RPL23AP59-201ENST00000399415 461 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 DNAJC19P6-201ENST00000401853 280 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 SDHDP6-201ENST00000414693 480 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 OR2X1P-201ENST00000421144 687 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RPL34P3-201ENST00000421454 338 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 HMGB3P24-201ENST00000433260 622 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC073052.1-201ENST00000440417 714 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RPL34P26-201ENST00000445636 354 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 Z83846.1-201ENST00000446798 265 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RPL7P45-201ENST00000455851 743 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RPL7P32-201ENST00000457119 744 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 NAP1L1P3-201ENST00000462291 880 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RPS23P6-201ENST00000466136 431 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 CDH12P2-201ENST00000504393 298 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 RPL7L1P4-201ENST00000513004 707 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 SCARNA21.2-201ENST00000516600 166 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 TMEM97P2-201ENST00000517841 403 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC022404.1-201ENST00000555320 273 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC025588.2-201ENST00000604851 466 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 FRG1HP-204ENST00000617940 757 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC123767.1-202ENST00000620407 817 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC138907.10-201ENST00000623708 983 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 AC016745.2-201ENST00000608834 3443 ntBASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
PTCHD3Q3KNS1 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 BCORP1-203ENST00000513194 5093 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 SUCLA2P2-201ENST00000417269 1309 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AL034546.1-201ENST00000623740 3693 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 GTF2IP4-201ENST00000453092 2054 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RNU4-68P-201ENST00000364314 141 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 MTND4P13-201ENST00000402078 1023 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC092638.1-201ENST00000411966 1275 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AL662874.1-201ENST00000426065 230 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 FO393419.3-201ENST00000428741 282 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 MTND5P25-201ENST00000430499 799 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 EEF1B2P6-201ENST00000445713 673 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 OR51B8P-201ENST00000449892 769 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC012123.2-201ENST00000485809 248 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RPS12P31-201ENST00000491419 398 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 OR7E157P-201ENST00000494376 911 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC008837.1-201ENST00000511513 412 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms