Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.79□□□□□ -1.48
SCN4AP35499 RN7SKP224-201ENST00000364140 325 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 CASKP1-201ENST00000412870 582 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 RPL7AP52-201ENST00000458096 790 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 SAP18P1-201ENST00000512058 390 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.78□□□□□ -1.48
SCN4AP35499 SEPT10P1-201ENST00000517342 1162 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 MTCO1P49-201ENST00000523429 802 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 AC130364.2-201ENST00000528639 604 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.78□□□□□ -1.48
SCN4AP35499 AC022726.1-201ENST00000587475 207 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.78□□□□□ -1.48
SCN4AP35499 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.78□□□□□ -1.48
SCN4AP35499 AC012409.3-201ENST00000611343 981 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.78□□□□□ -1.48
SCN4AP35499 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SCN4AP35499 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SCN4AP35499 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SCN4AP35499 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.78□□□□□ -1.48
SCN4AP35499 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.78□□□□□ -1.48
SCN4AP35499 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.78□□□□□ -1.48
SCN4AP35499 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SCN4AP35499 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC5.78□□□□□ -1.48
SCN4AP35499 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
SCN4AP35499 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SCN4AP35499 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SCN4AP35499 AC017104.4-201ENST00000636283 1592 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
SCN4AP35499 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SCN4AP35499 NCOA4P2-201ENST00000340589 1813 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
SCN4AP35499 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
SCN4AP35499 ATP5F1P2-201ENST00000398143 760 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 AL022722.2-201ENST00000402519 180 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 SNORA11F-201ENST00000408237 128 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.78□□□□□ -1.48
SCN4AP35499 AC017019.1-201ENST00000426129 261 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.78□□□□□ -1.48
SCN4AP35499 AC023424.1-201ENST00000496058 459 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 AC073358.1-201ENST00000505671 684 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.78□□□□□ -1.48
SCN4AP35499 RNU1-6P-201ENST00000516290 144 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.78□□□□□ -1.48
SCN4AP35499 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.78□□□□□ -1.48
SCN4AP35499 AC090948.1-201ENST00000607464 549 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.78□□□□□ -1.48
SCN4AP35499 AL022401.1-201ENST00000619498 108 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SCN4AP35499 AC025574.1-201ENST00000554784 1653 ntBASIC5.78□□□□□ -1.48
SCN4AP35499 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SCN4AP35499 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.77□□□□□ -1.48
SCN4AP35499 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.77□□□□□ -1.49
SCN4AP35499 PCAT14-202ENST00000627127 3935 ntBASIC5.77□□□□□ -1.49
SCN4AP35499 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.77□□□□□ -1.49
SCN4AP35499 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
SCN4AP35499 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.77□□□□□ -1.49
SCN4AP35499 RPL34P6-201ENST00000432390 345 ntBASIC5.77□□□□□ -1.49
SCN4AP35499 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.77□□□□□ -1.49
SCN4AP35499 YWHAZP2-201ENST00000440317 728 ntBASIC5.77□□□□□ -1.49
SCN4AP35499 IGBP1P4-201ENST00000503202 879 ntBASIC5.77□□□□□ -1.49
SCN4AP35499 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.77□□□□□ -1.49
SCN4AP35499 AC084824.2-201ENST00000548906 345 ntBASIC5.77□□□□□ -1.49
SCN4AP35499 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.77□□□□□ -1.49
SCN4AP35499 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.77□□□□□ -1.49
SCN4AP35499 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
SCN4AP35499 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SCN4AP35499 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.77□□□□□ -1.49
SCN4AP35499 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.77□□□□□ -1.49
SCN4AP35499 SMG1P6-201ENST00000532337 2930 ntBASIC5.77□□□□□ -1.49
SCN4AP35499 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
SCN4AP35499 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.77□□□□□ -1.49
SCN4AP35499 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SCN4AP35499 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
SCN4AP35499 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 RNA5SP187-201ENST00000384400 119 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
SCN4AP35499 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.76□□□□□ -1.49
SCN4AP35499 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.76□□□□□ -1.49
SCN4AP35499 AC138761.5-201ENST00000433967 325 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 SCAND3P1-201ENST00000439854 1060 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 AC079168.2-201ENST00000453977 416 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.76□□□□□ -1.49
SCN4AP35499 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.76□□□□□ -1.49
SCN4AP35499 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
SCN4AP35499 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SCN4AP35499 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms