Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.74□□□□□ -1.65
LMX1BO60663 VN1R87P-201ENST00000596706 487 ntBASIC4.74□□□□□ -1.65
LMX1BO60663 AC116651.1-201ENST00000609724 556 ntBASIC4.74□□□□□ -1.65
LMX1BO60663 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.74□□□□□ -1.65
LMX1BO60663 AC241377.1-201ENST00000619797 406 ntBASIC4.74□□□□□ -1.65
LMX1BO60663 AC138907.10-201ENST00000623708 983 ntBASIC4.74□□□□□ -1.65
LMX1BO60663 AC068787.1-201ENST00000623908 691 ntBASIC4.74□□□□□ -1.65
LMX1BO60663 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC4.74□□□□□ -1.65
LMX1BO60663 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.74□□□□□ -1.65
LMX1BO60663 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LMX1BO60663 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LMX1BO60663 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
LMX1BO60663 AP005435.3-201ENST00000531260 3198 ntBASIC4.74□□□□□ -1.65
LMX1BO60663 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LMX1BO60663 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LMX1BO60663 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.74□□□□□ -1.65
LMX1BO60663 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
LMX1BO60663 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
LMX1BO60663 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC4.74□□□□□ -1.65
LMX1BO60663 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
LMX1BO60663 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
LMX1BO60663 RNU4-2-201ENST00000365668 141 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 AL645927.1-201ENST00000396783 406 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 SLC35E1P1-201ENST00000419313 864 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 TCEA1P2-201ENST00000420496 906 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AC013262.1-201ENST00000426710 252 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 VTI1BP4-201ENST00000427516 527 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 MTCO1P45-201ENST00000431457 267 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 OR6D1P-201ENST00000436165 939 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 EEF1B2P5-201ENST00000444820 548 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 RANP1-206ENST00000455094 651 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AP002345.1-201ENST00000456493 928 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.73□□□□□ -1.65
LMX1BO60663 snoU109.3-201ENST00000459477 145 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 RNU7-157P-201ENST00000459600 66 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 NPM1P17-201ENST00000479221 602 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 RPL15P21-201ENST00000495592 567 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AC024558.1-201ENST00000505008 528 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 EEF1A1P37-201ENST00000522748 715 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.73□□□□□ -1.65
LMX1BO60663 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.73□□□□□ -1.65
LMX1BO60663 OSBPL9P3-201ENST00000534523 595 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 HMGN2P6-201ENST00000551091 273 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AL049779.2-201ENST00000553847 315 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 AC092868.3-201ENST00000560515 784 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.73□□□□□ -1.65
LMX1BO60663 AC016839.1-201ENST00000578162 867 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.73□□□□□ -1.65
LMX1BO60663 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.73□□□□□ -1.65
LMX1BO60663 AC112503.1-201ENST00000608436 391 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 OR51C1P-201ENST00000608504 942 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AC004241.3-201ENST00000611728 517 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 AC009159.2-201ENST00000617603 606 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 FRG1EP-201ENST00000634469 770 ntBASIC4.73□□□□□ -1.65
LMX1BO60663 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.73□□□□□ -1.65
LMX1BO60663 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LMX1BO60663 OFD1P8Y-201ENST00000449148 1433 ntBASIC4.72□□□□□ -1.65
LMX1BO60663 AC002525.1-201ENST00000624392 1622 ntBASIC4.72□□□□□ -1.65
LMX1BO60663 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LMX1BO60663 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
LMX1BO60663 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
LMX1BO60663 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
LMX1BO60663 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
LMX1BO60663 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
LMX1BO60663 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LMX1BO60663 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LMX1BO60663 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
LMX1BO60663 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms