Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR3157-201ENST00000578688 85 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 NPIPB1P-202ENST00000588786 828 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC015802.2-201ENST00000589690 189 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 FAM60CP-201ENST00000591086 664 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 MIMT1-201ENST00000597105 1050 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC091946.2-201ENST00000606105 291 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC008498.1-201ENST00000613012 531 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC072046.2-201ENST00000618366 268 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC022079.2-201ENST00000619739 566 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC015726.3-201ENST00000624501 418 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AP001541.1-201ENST00000623322 1904 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 Y_RNA.61-201ENST00000362835 102 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 SNORA64.3-201ENST00000365647 134 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 RNU6-116P-201ENST00000384042 109 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 YWHAZP4-201ENST00000392459 708 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 OR51A5P-201ENST00000415429 942 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 NPM1P11-201ENST00000417106 855 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 TNPO1P1-201ENST00000423641 1138 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 VN1R42P-201ENST00000424651 344 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC073410.1-201ENST00000435125 589 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 NDUFS5P5-201ENST00000437256 321 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC016908.1-201ENST00000442571 1219 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC234771.2-201ENST00000445718 597 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC068135.1-201ENST00000446164 246 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC003071.1-201ENST00000451219 789 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 RPL31P58-201ENST00000469001 379 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC090602.1-201ENST00000469695 252 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC069304.1-201ENST00000491593 704 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC092045.1-201ENST00000495716 1231 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC093890.1-201ENST00000502554 540 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 MYL12BP2-201ENST00000503948 512 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC008885.2-201ENST00000509506 930 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC079140.3-201ENST00000511111 550 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 NDUFA5P2-201ENST00000519723 344 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC104383.1-201ENST00000530297 370 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 OR5AM1P-201ENST00000532136 1032 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 LINC00556-201ENST00000569603 412 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 MTCO3P13-201ENST00000577757 781 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC022146.1-201ENST00000595307 847 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 DYNLL1P1-201ENST00000595442 269 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 VN1R82P-201ENST00000601481 356 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 VN1R81P-201ENST00000602085 372 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC063943.3-201ENST00000615562 356 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC009509.4-201ENST00000619202 509 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC005899.6-201ENST00000620729 297 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC012150.2-201ENST00000621300 544 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AL138693.1-201ENST00000622219 129 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC099654.5-201ENST00000636479 350 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 CASC19-274ENST00000642018 970 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 AC016745.2-201ENST00000608834 3443 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 OFD1P15Y-201ENST00000411536 1392 ntBASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC7.04□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms