Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.09□□□□□ -1.6
CCDC3Q9BQI4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.09□□□□□ -1.6
CCDC3Q9BQI4 INTS6P1-201ENST00000504674 2530 ntBASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 U3.3-201ENST00000362986 216 ntBASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 FAR1P1-201ENST00000427163 934 ntBASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 FTLP19-201ENST00000433300 394 ntBASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC079168.1-201ENST00000458741 345 ntBASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 CR383656.6-201ENST00000550518 394 ntBASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 MIR7853-201ENST00000584820 132 ntBASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AP003400.3-201ENST00000624904 346 ntBASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC099654.6-201ENST00000636487 512 ntBASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC3Q9BQI4 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AC140134.1-201ENST00000511830 3544 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 CASC19-221ENST00000641309 1382 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AC015813.6-201ENST00000624409 5808 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 RN7SKP153-201ENST00000365026 316 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 NUDT19P3-201ENST00000404698 555 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 GJA6P-201ENST00000415117 1042 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 NIPA2P1-201ENST00000426223 976 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AL360081.1-201ENST00000428299 555 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 MTND4LP14-201ENST00000429447 288 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 MTND4P15-201ENST00000437913 1033 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 TRY2P-201ENST00000448860 689 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 CCRL1P1-201ENST00000449542 1053 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AC007686.1-201ENST00000488511 463 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms