Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC090515.3-201ENST00000560431 315 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 RBM22P12-201ENST00000567098 1255 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC021483.2-201ENST00000567415 758 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC007423.1-201ENST00000605009 627 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 HIRAP1-201ENST00000605318 787 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC055764.2-201ENST00000610089 670 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC004477.3-201ENST00000614061 590 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 DDX18P4-201ENST00000511690 1966 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC011933.2-201ENST00000578539 2790 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 OR55B1P-203ENST00000641518 2602 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
VMP1Q96GC9 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VMP1Q96GC9 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
VMP1Q96GC9 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AL136116.2-201ENST00000404020 785 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 CTSL3P-202ENST00000412179 788 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AL358176.3-201ENST00000420757 454 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 MTCO1P52-201ENST00000433928 531 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 FMO7P-201ENST00000436045 768 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 RPL34P26-201ENST00000445636 354 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC012512.1-201ENST00000446594 718 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC073909.1-201ENST00000447112 999 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC239809.1-201ENST00000450470 217 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 SNORD125-201ENST00000459538 96 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 RPS7P6-201ENST00000485777 579 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 IGLV3-24-201ENST00000517477 197 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 OR4A17P-201ENST00000526032 904 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC090022.1-201ENST00000546569 311 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 HSPE1P2-201ENST00000554777 306 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 HMGB3P26-201ENST00000560051 582 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 MIR4311-201ENST00000580794 100 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 MIR548Y-201ENST00000582739 110 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 MIR3936-201ENST00000584304 110 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC104695.2-201ENST00000605056 775 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC079791.1-201ENST00000605356 973 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 SAMMSON-227ENST00000642114 1199 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
VMP1Q96GC9 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC006206.1-201ENST00000544842 3387 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
VMP1Q96GC9 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
VMP1Q96GC9 AC074029.4-201ENST00000624796 1859 ntBASIC5.26□□□□□ -1.57
VMP1Q96GC9 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VMP1Q96GC9 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
VMP1Q96GC9 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.26□□□□□ -1.57
VMP1Q96GC9 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
VMP1Q96GC9 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.25□□□□□ -1.57
VMP1Q96GC9 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
VMP1Q96GC9 ADAM5-202ENST00000399789 1942 ntBASIC5.25□□□□□ -1.57
VMP1Q96GC9 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VMP1Q96GC9 AC025574.1-201ENST00000554784 1653 ntBASIC5.25□□□□□ -1.57
VMP1Q96GC9 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
VMP1Q96GC9 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VMP1Q96GC9 OR6E1P-201ENST00000414424 923 ntBASIC5.25□□□□□ -1.57
VMP1Q96GC9 AL513325.1-201ENST00000417716 1034 ntBASIC5.25□□□□□ -1.57
VMP1Q96GC9 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.25□□□□□ -1.57
VMP1Q96GC9 AL133173.1-201ENST00000423458 397 ntBASIC5.25□□□□□ -1.57
VMP1Q96GC9 TRIM60P13-201ENST00000432350 1283 ntBASIC5.25□□□□□ -1.57
VMP1Q96GC9 AC006335.2-201ENST00000437993 330 ntBASIC5.25□□□□□ -1.57
VMP1Q96GC9 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms