Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC112Q8NEF3 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC112Q8NEF3 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 LINC01109-201ENST00000603837 3081 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC120338.1-201ENST00000625074 1541 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 GABARAPL3-201ENST00000412799 354 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 RPS27P18-201ENST00000431701 247 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC092162.1-201ENST00000432828 434 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC012075.1-201ENST00000436549 580 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 RPS29P9-201ENST00000440360 171 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 EIF2S2P5-201ENST00000457635 968 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 COPS8P2-201ENST00000473228 627 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 RN7SL799P-201ENST00000475891 298 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC006499.3-201ENST00000506077 748 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 RPL10P14-201ENST00000565265 298 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 MIR1269B-201ENST00000580405 75 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC010245.2-201ENST00000606908 1167 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 RPSAP73-201ENST00000614820 330 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC007204.2-201ENST00000615022 616 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 WBP1LP8-201ENST00000617401 327 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC005840.5-201ENST00000619166 599 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC005332.5-201ENST00000591222 2919 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 AC116158.1-201ENST00000560231 2129 ntBASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC112Q8NEF3 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 MIR1182-201ENST00000408363 97 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 U3.35-201ENST00000408405 208 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 SEPT7P8-201ENST00000413308 775 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 HSPE1P27-201ENST00000430808 296 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC073052.1-201ENST00000440417 714 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 RPL23AP37-201ENST00000479658 549 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 RPL7P6-201ENST00000480903 738 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 RFPL4AP5-201ENST00000514977 504 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AL671862.1-201ENST00000515851 349 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AL049779.2-201ENST00000553847 315 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 RPL21P7-201ENST00000557463 483 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC044860.2-201ENST00000561005 179 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC107993.1-201ENST00000591343 684 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 FKBP1AP1-201ENST00000594588 318 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC009643.2-201ENST00000603543 1448 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC104687.2-201ENST00000604442 342 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC087783.2-201ENST00000605070 562 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AL512329.2-201ENST00000607350 548 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC104118.1-201ENST00000607625 1589 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AC234782.5-201ENST00000617723 324 ntBASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC112Q8NEF3 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 MAPK10-286ENST00000641208 8747 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RNU1-83P-201ENST00000363426 164 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RNA5SP234-201ENST00000363916 119 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 SNORA70-201ENST00000384436 135 ntBASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms