Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC095055.1-201ENST00000603472 1113 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 SUMO2P15-201ENST00000604285 278 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AL512624.1-201ENST00000613638 469 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC015660.5-201ENST00000623238 564 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SKA3Q8IX90 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SKA3Q8IX90 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SKA3Q8IX90 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SKA3Q8IX90 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 OR51H2P-202ENST00000641424 3046 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 NUDT19P3-201ENST00000404698 555 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 RN7SKP125-201ENST00000410481 302 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 OR2AH1P-201ENST00000425717 928 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 FAR2P1-206ENST00000449736 709 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 AL591363.1-201ENST00000450091 483 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 HMGN1P8-201ENST00000463578 288 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC079841.1-201ENST00000481228 950 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 HIGD1AP14-201ENST00000507617 282 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC022884.2-201ENST00000578535 580 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 RN7SL52P-201ENST00000584271 284 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC079791.1-201ENST00000605356 973 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 AL353600.1-201ENST00000608148 251 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AP005131.7-201ENST00000610087 611 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC093909.5-201ENST00000621839 1799 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 AC126323.6-202ENST00000568092 3511 ntBASIC4.54□□□□□ -1.68
SKA3Q8IX90 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.54□□□□□ -1.68
SKA3Q8IX90 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SKA3Q8IX90 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SKA3Q8IX90 AP000542.2-201ENST00000623199 6179 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 SNORA17.1-201ENST00000362945 126 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 RN7SKP126-201ENST00000411143 300 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 RNU2-22P-201ENST00000411266 212 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 AC007738.1-201ENST00000413892 348 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 AC073587.1-201ENST00000447093 876 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 AC018638.3-201ENST00000461273 132 ntBASIC4.53□□□□□ -1.68
SKA3Q8IX90 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.53□□□□□ -1.68
SKA3Q8IX90 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms