Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC008629.2-201ENST00000503783 483 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC105384.2-201ENST00000508433 640 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 PRELID3BP5-201ENST00000508612 460 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC109481.1-201ENST00000509173 282 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 RNU6-334P-201ENST00000517072 102 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 WBP1LP3-201ENST00000523033 208 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC107918.3-201ENST00000533272 382 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC122134.1-202ENST00000569111 1201 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 BNIP3P39-201ENST00000601077 554 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC015849.2-201ENST00000605738 409 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC120053.1-201ENST00000607706 736 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC007786.3-201ENST00000615154 596 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC100827.5-201ENST00000615883 426 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC008115.4-201ENST00000619780 775 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC095038.2-201ENST00000621464 1070 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AP000346.3-201ENST00000622821 210 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC097460.3-201ENST00000623099 442 ntBASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC4.68□□□□□ -1.66
PDLIM3Q53GG5 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AL359715.4-201ENST00000606629 1436 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 SNORA5.1-201ENST00000384275 131 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 RNU6-31P-201ENST00000384388 108 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 ATP5F1P6-201ENST00000402768 767 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 RNU2-50P-201ENST00000410494 143 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC069282.1-201ENST00000411911 526 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AL590806.1-201ENST00000415818 853 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 RNF10P1-201ENST00000418589 369 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 BTF3P9-201ENST00000418784 283 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC091390.1-201ENST00000433904 331 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC093716.1-201ENST00000435923 377 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 MTCYBP29-201ENST00000436327 1006 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 MTND2P40-201ENST00000436718 841 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 MED28P3-201ENST00000444288 531 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 EEF1B2P5-201ENST00000444820 548 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AL445466.1-201ENST00000448432 357 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 MEMO1P4-201ENST00000453590 386 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC096741.1-201ENST00000472250 846 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC116562.1-201ENST00000485355 781 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 RN7SL184P-201ENST00000488308 297 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 NPM1P28-201ENST00000492269 840 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 MTCO2P9-201ENST00000503214 694 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 HIGD1AP14-201ENST00000507617 282 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 SNORA70.20-201ENST00000516848 126 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 HAUS1P3-201ENST00000523909 662 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC027216.1-201ENST00000577726 685 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC034236.3-201ENST00000605999 461 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC004158.1-201ENST00000564508 4319 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms