Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC008751.2-201ENST00000597885 980 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC125494.2-201ENST00000602431 657 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AL049767.1-202ENST00000637826 242 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC087565.3-203ENST00000641018 837 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC139713.2-210ENST00000641741 992 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AP005435.3-201ENST00000531260 3198 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 MT-RNR2-201ENST00000387347 1559 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 ANKRD36P1-201ENST00000344424 659 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AL159987.1-201ENST00000347911 293 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 UBE2Q2P1-202ENST00000354771 883 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 MIR513B-201ENST00000385136 84 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 HMGB3P31-201ENST00000413333 595 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 LINC01347-201ENST00000417964 355 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AL449283.1-202ENST00000418249 604 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 KRR1P1-201ENST00000419430 803 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC093155.2-201ENST00000420734 937 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 PRUNEP1-201ENST00000425846 705 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC084290.1-201ENST00000434995 374 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 YWHAZP2-201ENST00000440317 728 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC097499.1-201ENST00000444277 208 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 REG1CP-206ENST00000447469 496 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC004022.1-201ENST00000447766 1066 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 TRY2P-201ENST00000448860 689 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 RN7SL570P-201ENST00000484405 292 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 CR383656.1-201ENST00000484916 377 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC073610.1-201ENST00000489971 396 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC009120.1-201ENST00000493458 473 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 SCARNA6.1-201ENST00000516989 238 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC104417.1-201ENST00000523974 751 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC010547.6-201ENST00000571789 193 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 BNIP3P24-201ENST00000593398 557 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 MIR6768-201ENST00000610734 72 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC109309.2-201ENST00000612597 332 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AP004607.9-201ENST00000618202 316 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 AL133268.1-201ENST00000405676 1401 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 ZNF733P-202ENST00000444809 1573 ntBASIC5.55□□□□□ -1.52
PTCHD3Q3KNS1 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms