Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 AC114947.2-201ENST00000565748 2125 ntBASIC5.81□□□□□ -1.48
COPB1P53618 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 AC083843.2-201ENST00000568248 6253 ntBASIC5.81□□□□□ -1.48
COPB1P53618 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.81□□□□□ -1.48
COPB1P53618 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.81□□□□□ -1.48
COPB1P53618 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
COPB1P53618 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 Z86062.1-201ENST00000406773 777 ntBASIC5.81□□□□□ -1.48
COPB1P53618 RN7SKP16-201ENST00000410180 299 ntBASIC5.81□□□□□ -1.48
COPB1P53618 VN1R31P-201ENST00000417498 730 ntBASIC5.81□□□□□ -1.48
COPB1P53618 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.81□□□□□ -1.48
COPB1P53618 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.81□□□□□ -1.48
COPB1P53618 PRUNEP1-201ENST00000425846 705 ntBASIC5.81□□□□□ -1.48
COPB1P53618 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.81□□□□□ -1.48
COPB1P53618 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.81□□□□□ -1.48
COPB1P53618 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC5.81□□□□□ -1.48
COPB1P53618 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.81□□□□□ -1.48
COPB1P53618 AC105399.1-202ENST00000447303 205 ntBASIC5.81□□□□□ -1.48
COPB1P53618 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.81□□□□□ -1.48
COPB1P53618 ZNF736P8Y-201ENST00000451913 669 ntBASIC5.81□□□□□ -1.48
COPB1P53618 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.81□□□□□ -1.48
COPB1P53618 AC105918.1-201ENST00000474399 838 ntBASIC5.81□□□□□ -1.48
COPB1P53618 AC015864.1-201ENST00000496512 544 ntBASIC5.81□□□□□ -1.48
COPB1P53618 RN7SKP99-201ENST00000517028 307 ntBASIC5.81□□□□□ -1.48
COPB1P53618 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC5.81□□□□□ -1.48
COPB1P53618 AC005341.1-201ENST00000571086 708 ntBASIC5.81□□□□□ -1.48
COPB1P53618 AC090666.1-201ENST00000578241 445 ntBASIC5.81□□□□□ -1.48
COPB1P53618 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.81□□□□□ -1.48
COPB1P53618 AL162431.4-201ENST00000604674 411 ntBASIC5.81□□□□□ -1.48
COPB1P53618 AC004241.3-201ENST00000611728 517 ntBASIC5.81□□□□□ -1.48
COPB1P53618 AC008759.3-201ENST00000613300 508 ntBASIC5.81□□□□□ -1.48
COPB1P53618 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 AL356863.1-201ENST00000623378 1080 ntBASIC5.81□□□□□ -1.48
COPB1P53618 AC068787.1-201ENST00000623908 691 ntBASIC5.81□□□□□ -1.48
COPB1P53618 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC5.81□□□□□ -1.48
COPB1P53618 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.81□□□□□ -1.48
COPB1P53618 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.81□□□□□ -1.48
COPB1P53618 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.81□□□□□ -1.48
COPB1P53618 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
COPB1P53618 AC004817.4-201ENST00000602396 3625 ntBASIC5.81□□□□□ -1.48
COPB1P53618 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
COPB1P53618 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC5.81□□□□□ -1.48
COPB1P53618 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COPB1P53618 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.8□□□□□ -1.48
COPB1P53618 AC020633.1-201ENST00000468439 2247 ntBASIC5.8□□□□□ -1.48
COPB1P53618 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.8□□□□□ -1.48
COPB1P53618 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COPB1P53618 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COPB1P53618 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COPB1P53618 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COPB1P53618 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.8□□□□□ -1.48
COPB1P53618 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
COPB1P53618 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
COPB1P53618 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.8□□□□□ -1.48
COPB1P53618 AL133388.1-201ENST00000404509 287 ntBASIC5.8□□□□□ -1.48
COPB1P53618 OR4K12P-201ENST00000406538 961 ntBASIC5.8□□□□□ -1.48
COPB1P53618 AC098592.2-201ENST00000413158 265 ntBASIC5.8□□□□□ -1.48
COPB1P53618 RANP4-201ENST00000413361 655 ntBASIC5.8□□□□□ -1.48
COPB1P53618 SSR1P2-201ENST00000415208 787 ntBASIC5.8□□□□□ -1.48
COPB1P53618 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
COPB1P53618 AC079355.1-201ENST00000421770 223 ntBASIC5.8□□□□□ -1.48
COPB1P53618 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.8□□□□□ -1.48
COPB1P53618 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.8□□□□□ -1.48
COPB1P53618 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.8□□□□□ -1.48
COPB1P53618 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.8□□□□□ -1.48
COPB1P53618 DNAJB5P1-201ENST00000454004 806 ntBASIC5.8□□□□□ -1.48
COPB1P53618 DUXAP8-207ENST00000456786 622 ntBASIC5.8□□□□□ -1.48
COPB1P53618 snoU109.3-201ENST00000459477 145 ntBASIC5.8□□□□□ -1.48
COPB1P53618 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COPB1P53618 NPM1P29-201ENST00000483112 803 ntBASIC5.8□□□□□ -1.48
COPB1P53618 RN7SL423P-201ENST00000486202 304 ntBASIC5.8□□□□□ -1.48
COPB1P53618 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COPB1P53618 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.8□□□□□ -1.48
COPB1P53618 RPS4XP14-201ENST00000493072 781 ntBASIC5.8□□□□□ -1.48
COPB1P53618 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
COPB1P53618 AK4P6-201ENST00000505168 528 ntBASIC5.8□□□□□ -1.48
COPB1P53618 AC121161.1-201ENST00000510606 652 ntBASIC5.8□□□□□ -1.48
COPB1P53618 ASNSP4-201ENST00000511103 447 ntBASIC5.8□□□□□ -1.48
COPB1P53618 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.8□□□□□ -1.48
COPB1P53618 RNU5A-7P-201ENST00000515979 116 ntBASIC5.8□□□□□ -1.48
COPB1P53618 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC5.8□□□□□ -1.48
COPB1P53618 HMGB1P46-201ENST00000520062 610 ntBASIC5.8□□□□□ -1.48
COPB1P53618 AC112191.2-201ENST00000522428 333 ntBASIC5.8□□□□□ -1.48
COPB1P53618 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.8□□□□□ -1.48
COPB1P53618 AP003066.2-201ENST00000529375 555 ntBASIC5.8□□□□□ -1.48
COPB1P53618 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.8□□□□□ -1.48
COPB1P53618 C1GALT1P1-201ENST00000548895 1089 ntBASIC5.8□□□□□ -1.48
COPB1P53618 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC5.8□□□□□ -1.48
COPB1P53618 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.8□□□□□ -1.48
COPB1P53618 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC5.8□□□□□ -1.48
COPB1P53618 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms