Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
CUX1P39880 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
CUX1P39880 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CUX1P39880 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
CUX1P39880 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
CUX1P39880 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC7.96□□□□□ -1.14
CUX1P39880 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC7.95□□□□□ -1.14
CUX1P39880 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
CUX1P39880 ZNF137P-201ENST00000456718 1920 ntBASIC7.95□□□□□ -1.14
CUX1P39880 AC004817.4-201ENST00000602396 3625 ntBASIC7.95□□□□□ -1.14
CUX1P39880 AP005432.1-201ENST00000580891 3485 ntBASIC7.95□□□□□ -1.14
CUX1P39880 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
CUX1P39880 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC7.95□□□□□ -1.14
CUX1P39880 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC7.95□□□□□ -1.14
CUX1P39880 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC7.95□□□□□ -1.14
CUX1P39880 AL356387.2-201ENST00000422272 243 ntBASIC7.95□□□□□ -1.14
CUX1P39880 RPS27AP6-201ENST00000427962 448 ntBASIC7.95□□□□□ -1.14
CUX1P39880 RPS3AP54-201ENST00000435535 734 ntBASIC7.95□□□□□ -1.14
CUX1P39880 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC7.95□□□□□ -1.14
CUX1P39880 RPL21P126-201ENST00000470049 478 ntBASIC7.95□□□□□ -1.14
CUX1P39880 AC091167.1-201ENST00000492017 396 ntBASIC7.95□□□□□ -1.14
CUX1P39880 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CUX1P39880 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC7.95□□□□□ -1.14
CUX1P39880 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.14
CUX1P39880 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC7.95□□□□□ -1.14
CUX1P39880 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC7.95□□□□□ -1.14
CUX1P39880 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
CUX1P39880 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC7.95□□□□□ -1.14
CUX1P39880 AC007998.4-201ENST00000612496 2533 ntBASIC7.95□□□□□ -1.14
CUX1P39880 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC7.94□□□□□ -1.14
CUX1P39880 UGT2B26P-201ENST00000508672 1613 ntBASIC7.94□□□□□ -1.14
CUX1P39880 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 RPL32P23-201ENST00000397237 405 ntBASIC7.94□□□□□ -1.14
CUX1P39880 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC7.94□□□□□ -1.14
CUX1P39880 AC021876.1-201ENST00000425959 359 ntBASIC7.94□□□□□ -1.14
CUX1P39880 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC7.94□□□□□ -1.14
CUX1P39880 CDC27P1-201ENST00000445384 715 ntBASIC7.94□□□□□ -1.14
CUX1P39880 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC7.94□□□□□ -1.14
CUX1P39880 AL162591.2-201ENST00000449634 317 ntBASIC7.94□□□□□ -1.14
CUX1P39880 IGLVIV-65-201ENST00000517313 360 ntBASIC7.94□□□□□ -1.14
CUX1P39880 TRAV8-5-201ENST00000537369 341 ntBASIC7.94□□□□□ -1.14
CUX1P39880 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC7.94□□□□□ -1.14
CUX1P39880 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC7.94□□□□□ -1.14
CUX1P39880 AC024941.1-201ENST00000612250 334 ntBASIC7.94□□□□□ -1.14
CUX1P39880 AC026367.3-201ENST00000619032 590 ntBASIC7.94□□□□□ -1.14
CUX1P39880 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC7.94□□□□□ -1.14
CUX1P39880 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC7.94□□□□□ -1.14
CUX1P39880 AC011447.7-201ENST00000624228 1590 ntBASIC7.94□□□□□ -1.14
CUX1P39880 CARF-203ENST00000414439 2099 ntTSL 2 BASIC7.94□□□□□ -1.14
CUX1P39880 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC7.94□□□□□ -1.14
CUX1P39880 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC7.94□□□□□ -1.14
CUX1P39880 AC107068.1-201ENST00000563286 4218 ntBASIC7.93□□□□□ -1.14
CUX1P39880 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
CUX1P39880 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
CUX1P39880 NPM1P18-201ENST00000434232 732 ntBASIC7.93□□□□□ -1.14
CUX1P39880 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC7.93□□□□□ -1.14
CUX1P39880 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC7.93□□□□□ -1.14
CUX1P39880 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC7.93□□□□□ -1.14
CUX1P39880 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC7.93□□□□□ -1.14
CUX1P39880 AC025164.1-201ENST00000496249 478 ntBASIC7.93□□□□□ -1.14
CUX1P39880 MTCO1P35-201ENST00000515270 228 ntBASIC7.93□□□□□ -1.14
CUX1P39880 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC7.93□□□□□ -1.14
CUX1P39880 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC7.93□□□□□ -1.14
CUX1P39880 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC7.93□□□□□ -1.14
CUX1P39880 AL352984.2-202ENST00000613699 155 ntBASIC7.93□□□□□ -1.14
CUX1P39880 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC7.93□□□□□ -1.14
CUX1P39880 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC7.93□□□□□ -1.14
CUX1P39880 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
CUX1P39880 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC7.93□□□□□ -1.14
CUX1P39880 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CUX1P39880 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC7.93□□□□□ -1.14
CUX1P39880 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
CUX1P39880 AL731566.1-201ENST00000620490 1937 ntBASIC7.93□□□□□ -1.14
CUX1P39880 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CUX1P39880 AL137058.3-201ENST00000624531 3099 ntBASIC7.93□□□□□ -1.14
CUX1P39880 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CUX1P39880 NLN-202ENST00000502464 8354 ntTSL 5 BASIC7.93□□□□□ -1.14
CUX1P39880 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC7.93□□□□□ -1.14
CUX1P39880 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC7.93□□□□□ -1.14
CUX1P39880 AC073073.1-201ENST00000493920 463 ntBASIC7.93□□□□□ -1.14
CUX1P39880 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC7.93□□□□□ -1.14
CUX1P39880 AL591034.3-201ENST00000605511 685 ntBASIC7.93□□□□□ -1.14
CUX1P39880 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC7.93□□□□□ -1.14
CUX1P39880 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC7.93□□□□□ -1.14
CUX1P39880 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
CUX1P39880 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
CUX1P39880 AL022323.4-201ENST00000623980 13120 ntBASIC7.92□□□□□ -1.14
CUX1P39880 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC7.92□□□□□ -1.14
CUX1P39880 SNORA71.2-201ENST00000364941 134 ntBASIC7.92□□□□□ -1.14
CUX1P39880 RNA5SP317-201ENST00000410176 116 ntBASIC7.92□□□□□ -1.14
CUX1P39880 RNA5SP311-201ENST00000411290 116 ntBASIC7.92□□□□□ -1.14
CUX1P39880 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC7.92□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms