Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC6.44□□□□□ -1.38
HOXC9P31274 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HOXC9P31274 PRPF38AP1-201ENST00000451976 933 ntBASIC6.44□□□□□ -1.38
HOXC9P31274 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.44□□□□□ -1.38
HOXC9P31274 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC6.44□□□□□ -1.38
HOXC9P31274 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC6.44□□□□□ -1.38
HOXC9P31274 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.44□□□□□ -1.38
HOXC9P31274 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.44□□□□□ -1.38
HOXC9P31274 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.44□□□□□ -1.38
HOXC9P31274 MIR4277-201ENST00000578298 84 ntBASIC6.44□□□□□ -1.38
HOXC9P31274 PRPF19P1-201ENST00000584766 898 ntBASIC6.44□□□□□ -1.38
HOXC9P31274 RPL12P25-202ENST00000598100 674 ntBASIC6.44□□□□□ -1.38
HOXC9P31274 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.44□□□□□ -1.38
HOXC9P31274 AL445423.1-201ENST00000609941 536 ntBASIC6.44□□□□□ -1.38
HOXC9P31274 AL359757.1-201ENST00000623176 255 ntBASIC6.44□□□□□ -1.38
HOXC9P31274 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.44□□□□□ -1.38
HOXC9P31274 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HOXC9P31274 AC099654.3-201ENST00000447087 1546 ntBASIC6.44□□□□□ -1.38
HOXC9P31274 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
HOXC9P31274 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
HOXC9P31274 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC6.44□□□□□ -1.38
HOXC9P31274 AL137100.1-201ENST00000556703 1620 ntBASIC6.43□□□□□ -1.38
HOXC9P31274 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXC9P31274 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 TLK1P1-201ENST00000456760 2440 ntBASIC6.43□□□□□ -1.38
HOXC9P31274 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
HOXC9P31274 RNA5SP397-201ENST00000391323 118 ntBASIC6.43□□□□□ -1.38
HOXC9P31274 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC6.43□□□□□ -1.38
HOXC9P31274 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.43□□□□□ -1.38
HOXC9P31274 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXC9P31274 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.43□□□□□ -1.38
HOXC9P31274 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC6.43□□□□□ -1.38
HOXC9P31274 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC6.43□□□□□ -1.38
HOXC9P31274 AC136624.4-201ENST00000573044 370 ntBASIC6.43□□□□□ -1.38
HOXC9P31274 AP005119.2-201ENST00000579735 1105 ntBASIC6.43□□□□□ -1.38
HOXC9P31274 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXC9P31274 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXC9P31274 RFC1-217ENST00000639695 867 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXC9P31274 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 AC068446.1-201ENST00000556425 1549 ntBASIC6.43□□□□□ -1.38
HOXC9P31274 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
HOXC9P31274 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC6.43□□□□□ -1.38
HOXC9P31274 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXC9P31274 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
HOXC9P31274 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HOXC9P31274 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXC9P31274 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXC9P31274 AL356317.1-201ENST00000396110 1436 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXC9P31274 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
HOXC9P31274 AL592148.3-201ENST00000608771 2646 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
HOXC9P31274 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
HOXC9P31274 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXC9P31274 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXC9P31274 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.42□□□□□ -1.38
HOXC9P31274 ARL2BPP10-201ENST00000446487 531 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 EIF2S2P2-201ENST00000447161 982 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 AC013356.1-201ENST00000489027 564 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXC9P31274 RN7SL558P-201ENST00000497468 299 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 NIFKP7-201ENST00000503365 834 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 AC025674.1-201ENST00000507074 324 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 RNA5SP116-201ENST00000516132 98 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC6.42□□□□□ -1.38
HOXC9P31274 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXC9P31274 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXC9P31274 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC6.42□□□□□ -1.38
HOXC9P31274 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXC9P31274 AL121873.1-201ENST00000616013 524 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 AC021422.1-201ENST00000621212 473 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC6.42□□□□□ -1.38
HOXC9P31274 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXC9P31274 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXC9P31274 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXC9P31274 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXC9P31274 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.42□□□□□ -1.38
HOXC9P31274 AL450345.1-202ENST00000605741 3881 ntBASIC6.42□□□□□ -1.38
HOXC9P31274 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXC9P31274 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.42□□□□□ -1.38
HOXC9P31274 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.41□□□□□ -1.38
HOXC9P31274 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6.41□□□□□ -1.38
HOXC9P31274 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
HOXC9P31274 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms