Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.51□□□□□ -1.37
COL6A1P12109 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.51□□□□□ -1.37
COL6A1P12109 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.51□□□□□ -1.37
COL6A1P12109 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 EEF1A1P30-201ENST00000429708 1315 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.5□□□□□ -1.37
COL6A1P12109 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 RN7SKP149-201ENST00000363008 344 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 RNA5SP131-201ENST00000365452 119 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 SNORD116-9-201ENST00000384000 95 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 SNORD116-3-201ENST00000384287 95 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 SNORD116-7-201ENST00000384404 95 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 SNORD116-5-201ENST00000384462 95 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 AP002784.2-201ENST00000397300 549 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 AL034403.1-201ENST00000399414 885 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 FABP12P1-201ENST00000401911 322 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC6.5□□□□□ -1.37
COL6A1P12109 RN7SKP166-201ENST00000410812 305 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC092017.2-201ENST00000427600 362 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 AC005033.1-201ENST00000428904 813 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 RPL7L1P9-201ENST00000431298 745 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 MTCO1P43-201ENST00000431831 488 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 AC084290.1-201ENST00000434995 374 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 MTND2P40-201ENST00000436718 841 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 RPS12P17-201ENST00000438591 377 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 NDUFAF4P2-201ENST00000445374 520 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 PTGES3P5-201ENST00000455109 434 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 ATG12P2-201ENST00000456830 416 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 OARD1-211ENST00000480585 829 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC008494.2-201ENST00000514544 370 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC6.5□□□□□ -1.37
COL6A1P12109 RNA5SP228-201ENST00000516232 133 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC6.5□□□□□ -1.37
COL6A1P12109 OR4A6P-201ENST00000534364 970 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC002069.2-201ENST00000603580 883 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 CYCSP1-201ENST00000604815 315 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 AC133644.2-201ENST00000608142 540 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC092159.4-201ENST00000624944 550 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 OR11H2-202ENST00000641517 1085 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL6A1P12109 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.5□□□□□ -1.37
COL6A1P12109 VPS35P1-201ENST00000563400 1518 ntBASIC6.5□□□□□ -1.37
COL6A1P12109 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL6A1P12109 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.5□□□□□ -1.37
COL6A1P12109 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
COL6A1P12109 AC125336.1-201ENST00000508893 2827 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL6A1P12109 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL6A1P12109 Y_RNA.201-201ENST00000364052 96 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 RNU4-68P-201ENST00000364314 141 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 METTL15P3-201ENST00000415522 1221 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.49□□□□□ -1.37
COL6A1P12109 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC6.49□□□□□ -1.37
COL6A1P12109 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC6.49□□□□□ -1.37
COL6A1P12109 AC073052.1-201ENST00000440417 714 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC6.49□□□□□ -1.37
COL6A1P12109 CUBNP2-201ENST00000443534 1139 ntBASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms