Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 IFIT1P1-201ENST00000400497 1449 ntBASIC5.28□□□□□ -1.56
HOXA3O43365 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
HOXA3O43365 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC5.28□□□□□ -1.56
HOXA3O43365 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXA3O43365 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
HOXA3O43365 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA3O43365 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA3O43365 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
HOXA3O43365 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXA3O43365 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA3O43365 TATDN2P3-201ENST00000452855 3665 ntBASIC5.28□□□□□ -1.56
HOXA3O43365 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
HOXA3O43365 LYARP1-201ENST00000436977 1501 ntBASIC5.28□□□□□ -1.56
HOXA3O43365 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA3O43365 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA3O43365 AC096992.2-201ENST00000609553 1684 ntBASIC5.28□□□□□ -1.56
HOXA3O43365 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 AC015871.3-201ENST00000618835 2261 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC5.27□□□□□ -1.57
HOXA3O43365 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 AC092447.7-201ENST00000422212 1621 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
HOXA3O43365 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
HOXA3O43365 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC5.27□□□□□ -1.57
HOXA3O43365 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC023245.2-201ENST00000530760 2978 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
HOXA3O43365 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 STAG3L4-201ENST00000352103 530 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 MIR199B-201ENST00000384849 110 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 RNU6-1320P-201ENST00000390838 107 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 RNU6-1269P-201ENST00000391139 107 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AL161909.1-201ENST00000397390 712 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA3O43365 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA3O43365 MTND4LP17-201ENST00000414607 293 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 MTCYBP38-201ENST00000417160 1123 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 AC004448.2-201ENST00000422360 586 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA3O43365 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA3O43365 RPL31P54-201ENST00000429803 370 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AC108479.1-201ENST00000431142 427 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA3O43365 TMX2P1-201ENST00000436507 708 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 POU5F1P5-201ENST00000445059 658 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 TPT1P7-201ENST00000458300 517 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 RNU6-599P-201ENST00000459383 107 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 RNU6-1193P-201ENST00000459461 107 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA3O43365 AP002884.1-201ENST00000479691 655 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 RPL7P41-201ENST00000485823 957 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AC096751.1-202ENST00000502691 1067 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC095057.1-201ENST00000507583 168 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA3O43365 GTF2F2P1-201ENST00000511083 675 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA3O43365 OR5AK1P-201ENST00000524837 922 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 CYCSP25-201ENST00000525280 316 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AP003392.2-201ENST00000527269 208 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AC016957.1-201ENST00000534895 309 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC006512.2-201ENST00000543250 486 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA3O43365 CCNG2P1-201ENST00000549521 1000 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC087883.1-201ENST00000551882 391 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA3O43365 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 AC002310.3-201ENST00000569728 723 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA3O43365 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA3O43365 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA3O43365 OR8G7P-201ENST00000616658 848 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 U6.42-201ENST00000618440 107 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA3O43365 RNU6-368P-201ENST00000620928 107 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 RNU6-538P-201ENST00000622329 107 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AC145207.9-201ENST00000623802 325 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AL357562.1-201ENST00000624911 609 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC025048.6-202ENST00000627667 438 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AL355480.1-201ENST00000629041 99 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA3O43365 AC007406.5-201ENST00000570140 3170 ntBASIC5.27□□□□□ -1.57
HOXA3O43365 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms