Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 LINC02431-202ENST00000505329 1788 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC005261.2-201ENST00000593427 4258 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC068860.1-201ENST00000623701 3736 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC025040.2-201ENST00000558657 1852 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 PFKFB1-203ENST00000545676 1591 ntTSL 2 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 TIMM21-204ENST00000580087 2524 ntTSL 5 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 Y_RNA.159-201ENST00000363674 87 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 RNU6-777P-201ENST00000364265 104 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 RNU6-317P-201ENST00000384031 107 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 MIR187-201ENST00000385062 109 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AL161626.1-201ENST00000441480 490 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 RPL7L1P11-201ENST00000446092 721 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 RPL7P12-201ENST00000446719 750 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC233279.1-201ENST00000455300 423 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 RN7SL332P-201ENST00000482163 254 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 EEF1A1P25-201ENST00000495704 1267 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 TECRP2-201ENST00000503270 928 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC090502.2-201ENST00000549267 280 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 HNRNPA1P71-201ENST00000559135 950 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC026458.1-201ENST00000564330 438 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AL163952.1-202ENST00000569625 600 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC012182.1-201ENST00000570133 895 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 MIR5682-201ENST00000584864 76 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 VN1R84P-201ENST00000593697 235 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 CASC19-232ENST00000641480 1244 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 ANKRD62P1-201ENST00000434304 1623 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 TLR3-202ENST00000504367 2310 ntTSL 2 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC090220.1-201ENST00000593078 1699 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AC096992.2-201ENST00000609553 1684 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 OPALIN-205ENST00000536387 3392 ntTSL 3 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 MTND4P27-201ENST00000450813 1354 ntBASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 MFSD8-218ENST00000641186 4448 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 SGK1-223ENST00000528577 1850 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 AC020978.8-201ENST00000571975 3022 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 GRIA2-201ENST00000264426 3445 ntAPPRIS ALT1 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 AL121949.2-201ENST00000403446 1548 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 DEFB124-201ENST00000317676 216 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 RNA5SP114-201ENST00000363780 113 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 RNU6-282P-201ENST00000365357 103 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 Y_RNA.419-201ENST00000384041 102 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 LDHAP5-201ENST00000394996 622 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 PDCL3P5-201ENST00000398028 722 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 RN7SKP29-201ENST00000410957 272 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 AC127391.1-201ENST00000411737 98 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 AL357752.1-201ENST00000412817 349 ntBASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 AL691515.2-201ENST00000414765 466 ntTSL 3 BASIC7.68□□□□□ -1.18
LIMD1Q9UGP4 AC009413.1-201ENST00000414823 399 ntBASIC7.68□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms