Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 RNU6-623P-201ENST00000363143 105 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 Y_RNA.436-201ENST00000384097 102 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 RNU6-225P-201ENST00000384613 103 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 MIR16-1-201ENST00000385271 89 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 OR7E156P-201ENST00000400303 464 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 GCNT1P4-201ENST00000404096 329 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 RNU6-757P-201ENST00000410334 100 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 NRBF2P2-201ENST00000413087 861 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 MTCO1P54-201ENST00000430139 712 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 FGF12-202ENST00000430714 603 ntTSL 2 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 ATP5F1P1-201ENST00000433775 569 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 PNPLA4P1-201ENST00000458328 305 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 RPL7P18-201ENST00000478965 734 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC090958.1-201ENST00000511122 351 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC008837.2-201ENST00000513076 418 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC105185.1-201ENST00000518705 535 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 MTCO1P49-201ENST00000523429 802 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 HIGD1AP17-201ENST00000554576 276 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 BPTFP1-201ENST00000579209 492 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 MIR4701-201ENST00000583094 63 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC096553.1-201ENST00000605169 829 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AL591167.1-201ENST00000607321 456 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC073592.6-201ENST00000624271 415 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC073593.1-201ENST00000624500 411 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 MSL3P1-202ENST00000440028 1468 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 AC114814.2-201ENST00000419195 485 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 AC004074.1-201ENST00000421810 1063 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 AL009174.1-201ENST00000426577 416 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 RPP40P1-201ENST00000426762 456 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 RPS24P8-201ENST00000431490 402 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 AC098826.1-201ENST00000433943 471 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 RPL23AP19-201ENST00000436229 369 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 ISCA1P2-201ENST00000438679 421 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 OR52E7P-201ENST00000452394 933 ntBASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.15□□□□□ -1.42
TRIM39Q9HCM9 RNU6-416P-201ENST00000516265 103 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 129.5 ms