Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SUMO2P19-201ENST00000518920 295 ntBASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AC093765.1-201ENST00000603758 881 ntBASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AP000843.1-201ENST00000624880 701 ntBASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AP005432.1-201ENST00000580891 3485 ntBASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 RPL12P9-201ENST00000412942 488 ntBASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 OR8A2P-201ENST00000528631 952 ntBASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AC040958.1-201ENST00000561102 201 ntBASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.25□□□□□ -1.41
SHANK3Q9BYB0 AC108751.5-201ENST00000492880 1336 ntBASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 PRSS3P4-201ENST00000453323 162 ntBASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 SNORA59A-201ENST00000459326 152 ntBASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AC007016.1-201ENST00000512110 244 ntBASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 RNU6-709P-201ENST00000517257 104 ntBASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 MIR3138-201ENST00000585238 82 ntBASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SHANK3Q9BYB0 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 OR4K17-201ENST00000315543 1032 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 AC007618.1-201ENST00000366455 732 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 RNU6ATAC5P-201ENST00000388104 126 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 NPM1P36-201ENST00000415681 835 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 QRSL1P2-201ENST00000418582 964 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 AC140479.3-201ENST00000418944 1126 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 VN1R37P-201ENST00000419096 748 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 RPL34P6-201ENST00000432390 345 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 AC006499.6-201ENST00000511169 607 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 AC026726.1-201ENST00000512859 601 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 TRAV8-5-201ENST00000537369 341 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 AC090948.2-201ENST00000607363 564 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 AC093388.1-201ENST00000609166 430 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 AC091953.5-201ENST00000622919 233 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 STX3-208ENST00000641815 3236 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 LINC02035-201ENST00000610128 5476 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 RAD17P1-201ENST00000418130 2042 ntBASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHANK3Q9BYB0 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 COX6CP13-201ENST00000428703 226 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 OR4C10P-201ENST00000434991 931 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 MIR3124-201ENST00000582636 67 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms