Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.32□□□□□ -1.56
HDDC3Q8N4P3 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 CASC19-221ENST00000641309 1382 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 MAPK10-263ENST00000641052 4307 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC092747.4-201ENST00000620519 1861 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 RNU4-23P-201ENST00000362839 140 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 RNA5SP123-201ENST00000363244 119 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC233289.1-201ENST00000403700 508 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AP000936.3-201ENST00000438127 255 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 RPL31P44-201ENST00000447680 377 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 RN7SL481P-201ENST00000477764 299 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 ATG10-AS1-201ENST00000504846 648 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 OR8X1P-201ENST00000534542 869 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC087888.1-201ENST00000550884 1254 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 MIR378J-201ENST00000611988 109 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AL391597.1-201ENST00000618707 694 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AP000346.3-201ENST00000622821 210 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 AL121950.1-201ENST00000624993 2077 ntBASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.31□□□□□ -1.56
HDDC3Q8N4P3 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 RNU6-618P-201ENST00000363518 112 ntBASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 PPIAP9-201ENST00000403866 498 ntBASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 USP9YP9-201ENST00000429406 715 ntBASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 VDAC1P6-201ENST00000430062 855 ntBASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AC090602.1-201ENST00000469695 252 ntBASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AC105233.1-201ENST00000498840 781 ntBASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 SCARNA20.4-201ENST00000516969 131 ntBASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AC012400.1-201ENST00000518452 381 ntBASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 RAB9BP1-201ENST00000519581 626 ntBASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.3□□□□□ -1.56
HDDC3Q8N4P3 AC084759.1-201ENST00000561168 290 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms