Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP41Q3LFD5 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AL603750.1-201ENST00000624216 1717 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AL512283.1-201ENST00000606756 1384 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 AL356057.1-202ENST00000402263 756 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 MIR1182-201ENST00000408363 97 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AL034379.1-201ENST00000423216 253 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC074367.1-201ENST00000438685 1125 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC073648.4-201ENST00000442655 781 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 CBX1P2-201ENST00000453841 458 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 MTND2P30-201ENST00000456663 382 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 MTND2P39-201ENST00000457230 764 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 STRADBP1-201ENST00000478954 1281 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 OR4A17P-201ENST00000526032 904 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 CKS1BP1-201ENST00000555221 240 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 MIR3934-201ENST00000579806 107 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC005084.1-201ENST00000605160 304 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AL139124.1-201ENST00000609123 421 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC244107.2-201ENST00000611773 76 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC015922.4-201ENST00000612568 690 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC015660.5-201ENST00000623238 564 ntBASIC5.6□□□□□ -1.51
USP41Q3LFD5 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP41Q3LFD5 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.6□□□□□ -1.51
USP41Q3LFD5 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP41Q3LFD5 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC083899.1-201ENST00000454465 3819 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC011503.2-201ENST00000594230 1500 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP41Q3LFD5 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 RNA5SP123-201ENST00000363244 119 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 U3.28-201ENST00000391249 210 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 OR8V1P-201ENST00000395193 873 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 AL078599.1-201ENST00000402075 293 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 PPIAP9-201ENST00000403866 498 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 DDX39BP1-205ENST00000422507 192 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 RPS29P10-201ENST00000439197 166 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC067904.2-201ENST00000517322 1283 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP41Q3LFD5 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 AP003049.1-201ENST00000529418 457 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 BRD9P1-201ENST00000529855 560 ntBASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.59□□□□□ -1.51
USP41Q3LFD5 AC091905.4-201ENST00000623432 202 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms