Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC2.89□□□□□ -1.95
HSPG2P98160 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 NPM1P34-201ENST00000428821 893 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AL035246.1-201ENST00000433554 1255 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC2.89□□□□□ -1.95
HSPG2P98160 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC2.89□□□□□ -1.95
HSPG2P98160 IMPA1P1-201ENST00000510718 842 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC087499.8-201ENST00000578406 226 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AC020634.1-201ENST00000608701 549 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 MIR6867-201ENST00000610636 67 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC099654.3-201ENST00000447087 1546 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
HSPG2P98160 AL390316.1-201ENST00000406279 553 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 BOLA3P4-201ENST00000418151 400 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AC009238.2-201ENST00000431026 355 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC2.89□□□□□ -1.95
HSPG2P98160 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC2.89□□□□□ -1.95
HSPG2P98160 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC068993.1-201ENST00000546724 589 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AC069542.2-201ENST00000624816 216 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 PIEZO2-201ENST00000302079 9356 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 MIR634-201ENST00000385208 97 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC2.89□□□□□ -1.95
HSPG2P98160 BX276092.6-201ENST00000430476 250 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 RPL21P89-201ENST00000444021 467 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 BX276092.8-201ENST00000455722 250 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC2.89□□□□□ -1.95
HSPG2P98160 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC146944.2-203ENST00000502493 354 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 AC139495.1-202ENST00000513164 354 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AP003730.1-201ENST00000524605 285 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 SNORA51-201ENST00000606420 132 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC015712.7-201ENST00000615211 635 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 MIR6839-201ENST00000620425 113 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC2.89□□□□□ -1.95
HSPG2P98160 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC009643.2-201ENST00000603543 1448 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC2.89□□□□□ -1.95
HSPG2P98160 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC2.89□□□□□ -1.95
HSPG2P98160 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 CR1-203ENST00000367051 7469 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 CR1-204ENST00000367052 7469 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 CR1-205ENST00000367053 7469 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC2.89□□□□□ -1.95
HSPG2P98160 Y_RNA.111-201ENST00000363248 100 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 AL136231.1-201ENST00000429407 730 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC2.89□□□□□ -1.95
HSPG2P98160 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC2.89□□□□□ -1.95
HSPG2P98160 MRPS21P3-201ENST00000436696 262 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 ZFRP1-201ENST00000457579 2970 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 TRMT10BP1-201ENST00000519377 943 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 CARD16-203ENST00000525374 503 ntTSL 3 BASIC2.89□□□□□ -1.95
HSPG2P98160 AC006116.5-201ENST00000591936 559 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 uc_338.7-201ENST00000621834 124 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 AC020978.9-201ENST00000624380 1141 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC2.89□□□□□ -1.95
HSPG2P98160 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC2.88□□□□□ -1.95
HSPG2P98160 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 ZNF812P-201ENST00000457674 1694 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC2.88□□□□□ -1.95
HSPG2P98160 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms