Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
RNF4P78317 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 RPL24P4-201ENST00000326586 421 ntBASIC6.21□□□□□ -1.42
RNF4P78317 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 RNU6-839P-201ENST00000363347 108 ntBASIC6.21□□□□□ -1.42
RNF4P78317 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 Y_RNA.554-201ENST00000384672 102 ntBASIC6.21□□□□□ -1.42
RNF4P78317 SNORD94-201ENST00000386037 137 ntBASIC6.21□□□□□ -1.42
RNF4P78317 RNU6-1300P-201ENST00000391046 108 ntBASIC6.21□□□□□ -1.42
RNF4P78317 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.21□□□□□ -1.42
RNF4P78317 RNU4-64P-201ENST00000410795 131 ntBASIC6.21□□□□□ -1.42
RNF4P78317 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.21□□□□□ -1.42
RNF4P78317 AC093698.1-201ENST00000423843 571 ntBASIC6.21□□□□□ -1.42
RNF4P78317 OR8F1P-201ENST00000425243 930 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 RPL21P110-201ENST00000433345 446 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AC245452.2-201ENST00000435222 392 ntBASIC6.21□□□□□ -1.42
RNF4P78317 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC6.21□□□□□ -1.42
RNF4P78317 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.21□□□□□ -1.42
RNF4P78317 CNOT7P2-201ENST00000441051 832 ntBASIC6.21□□□□□ -1.42
RNF4P78317 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC6.21□□□□□ -1.42
RNF4P78317 AC073476.1-201ENST00000452854 407 ntBASIC6.21□□□□□ -1.42
RNF4P78317 OR4G11P-201ENST00000492842 939 ntBASIC6.21□□□□□ -1.42
RNF4P78317 RPS26P24-201ENST00000497656 331 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AC114324.2-202ENST00000503812 134 ntBASIC6.21□□□□□ -1.42
RNF4P78317 MTCYBP43-201ENST00000513621 740 ntBASIC6.21□□□□□ -1.42
RNF4P78317 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.21□□□□□ -1.42
RNF4P78317 SNORA81.2-201ENST00000516868 170 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AP003080.1-202ENST00000526526 915 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.21□□□□□ -1.42
RNF4P78317 DEFB108A-201ENST00000530110 222 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AP002453.2-201ENST00000533503 320 ntBASIC6.21□□□□□ -1.42
RNF4P78317 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 CR383656.6-201ENST00000550518 394 ntBASIC6.21□□□□□ -1.42
RNF4P78317 HMGN2P47-201ENST00000559378 272 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.21□□□□□ -1.42
RNF4P78317 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 RN7SL66P-201ENST00000582099 264 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.21□□□□□ -1.42
RNF4P78317 SEPT7P9-203ENST00000604116 343 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AC098614.4-201ENST00000607601 462 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AL135999.3-201ENST00000610501 812 ntBASIC6.21□□□□□ -1.42
RNF4P78317 MIR6885-201ENST00000612241 66 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC6.21□□□□□ -1.42
RNF4P78317 AL356321.1-201ENST00000621360 228 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AL356596.1-201ENST00000624230 379 ntBASIC6.21□□□□□ -1.42
RNF4P78317 AP000577.1-201ENST00000624366 878 ntBASIC6.21□□□□□ -1.42
RNF4P78317 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 FANCD2P2-201ENST00000437591 1400 ntBASIC6.21□□□□□ -1.42
RNF4P78317 EED-206ENST00000527888 1422 ntTSL 2 BASIC6.21□□□□□ -1.42
RNF4P78317 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
RNF4P78317 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 MTND5P26-201ENST00000426018 1752 ntBASIC6.21□□□□□ -1.42
RNF4P78317 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC6.21□□□□□ -1.42
RNF4P78317 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
RNF4P78317 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.2□□□□□ -1.42
RNF4P78317 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.2□□□□□ -1.42
RNF4P78317 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
RNF4P78317 OR9G4-201ENST00000302957 984 ntBASIC6.2□□□□□ -1.42
RNF4P78317 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
RNF4P78317 RNU6-501P-201ENST00000364072 100 ntBASIC6.2□□□□□ -1.42
RNF4P78317 RNA5SP140-201ENST00000364524 92 ntBASIC6.2□□□□□ -1.42
RNF4P78317 SNORA62.2-201ENST00000364672 152 ntBASIC6.2□□□□□ -1.42
RNF4P78317 MIR1284-201ENST00000408337 120 ntBASIC6.2□□□□□ -1.42
RNF4P78317 RN7SKP296-201ENST00000411185 341 ntBASIC6.2□□□□□ -1.42
RNF4P78317 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC6.2□□□□□ -1.42
RNF4P78317 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
RNF4P78317 MTND4P28-201ENST00000426217 387 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AL365184.2-201ENST00000431139 435 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 RPEP4-201ENST00000437636 602 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms