Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PDCD5P1-201ENST00000543528 309 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXA3P55318 GLRXP2-201ENST00000555594 321 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXA3P55318 AC087477.6-201ENST00000559595 843 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 AC015720.2-201ENST00000567709 334 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXA3P55318 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXA3P55318 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXA3P55318 AC005520.3-201ENST00000602874 370 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXA3P55318 COX6CP4-201ENST00000605798 228 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 MIR6813-201ENST00000621638 56 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 FO681491.1-202ENST00000623392 737 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 AP001052.1-201ENST00000626421 99 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXA3P55318 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXA3P55318 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.67□□□□□ -1.82
FOXA3P55318 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXA3P55318 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
FOXA3P55318 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA3P55318 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA3P55318 AC007382.1-201ENST00000624376 2618 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
FOXA3P55318 AC090181.3-201ENST00000624777 1514 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA3P55318 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
FOXA3P55318 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
FOXA3P55318 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 OR52B3P-201ENST00000314715 928 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 OR56B2P-201ENST00000317102 954 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 ODF3-202ENST00000342593 386 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA3P55318 ATP5F1P2-201ENST00000398143 760 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXA3P55318 VN1R37P-201ENST00000419096 748 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 AC092570.3-201ENST00000420113 693 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA3P55318 EI24P4-201ENST00000423683 1078 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 GTF2IP2-201ENST00000424290 697 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 CDY8P-201ENST00000428380 1279 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXA3P55318 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 SNRPFP2-201ENST00000440710 251 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 CDY20P-201ENST00000447528 1279 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 AC104651.2-201ENST00000447549 528 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC3.66□□□□□ -1.82
FOXA3P55318 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA3P55318 AC011476.1-201ENST00000466725 307 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 OR2A3P-201ENST00000493774 953 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 RNA5SP392-201ENST00000516905 112 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA3P55318 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA3P55318 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXA3P55318 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
FOXA3P55318 RPL10P14-201ENST00000565265 298 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA3P55318 SLC25A36P1-201ENST00000590111 465 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 AL049794.2-201ENST00000616301 365 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 HTR1DP1-201ENST00000616500 888 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 AC091046.3-201ENST00000631455 1574 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 AC112255.1-201ENST00000624070 2493 ntBASIC3.66□□□□□ -1.82
FOXA3P55318 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXA3P55318 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
FOXA3P55318 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA3P55318 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA3P55318 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA3P55318 OR13C1P-202ENST00000641378 2919 ntBASIC3.65□□□□□ -1.82
FOXA3P55318 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
FOXA3P55318 RLIMP2-201ENST00000427891 1563 ntBASIC3.65□□□□□ -1.82
FOXA3P55318 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
FOXA3P55318 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXA3P55318 RNA5SP28-201ENST00000363841 119 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 PPCS-201ENST00000372556 984 ntTSL 2 BASIC3.65□□□□□ -1.83
FOXA3P55318 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA3P55318 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
FOXA3P55318 RN7SKP240-201ENST00000410583 375 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA3P55318 AC004690.1-201ENST00000418216 328 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AC093655.2-201ENST00000425735 631 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA3P55318 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 BX323845.1-201ENST00000432417 179 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXA3P55318 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA3P55318 AC107015.1-201ENST00000466902 747 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms