Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
MSH6P52701 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.87□□□□□ -1.31
MSH6P52701 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.87□□□□□ -1.31
MSH6P52701 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.87□□□□□ -1.31
MSH6P52701 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.87□□□□□ -1.31
MSH6P52701 RN7SL814P-201ENST00000487715 300 ntBASIC6.87□□□□□ -1.31
MSH6P52701 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.87□□□□□ -1.31
MSH6P52701 AC020593.1-201ENST00000507399 299 ntBASIC6.87□□□□□ -1.31
MSH6P52701 AC130364.2-201ENST00000528639 604 ntBASIC6.87□□□□□ -1.31
MSH6P52701 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.87□□□□□ -1.31
MSH6P52701 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.87□□□□□ -1.31
MSH6P52701 AC034105.4-201ENST00000568304 277 ntBASIC6.87□□□□□ -1.31
MSH6P52701 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC6.87□□□□□ -1.31
MSH6P52701 AC245389.1-201ENST00000605141 529 ntBASIC6.87□□□□□ -1.31
MSH6P52701 AL356608.1-201ENST00000610034 820 ntBASIC6.87□□□□□ -1.31
MSH6P52701 ZYXP1-201ENST00000617638 118 ntBASIC6.87□□□□□ -1.31
MSH6P52701 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.87□□□□□ -1.31
MSH6P52701 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC6.87□□□□□ -1.31
MSH6P52701 CASC19-255ENST00000641733 1385 ntBASIC6.87□□□□□ -1.31
MSH6P52701 RBPJP2-201ENST00000618187 1444 ntBASIC6.87□□□□□ -1.31
MSH6P52701 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
MSH6P52701 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.87□□□□□ -1.31
MSH6P52701 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
MSH6P52701 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSH6P52701 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSH6P52701 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSH6P52701 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.86□□□□□ -1.31
MSH6P52701 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6.86□□□□□ -1.31
MSH6P52701 SNORA70.6-201ENST00000383934 134 ntBASIC6.86□□□□□ -1.31
MSH6P52701 RPL32P23-201ENST00000397237 405 ntBASIC6.86□□□□□ -1.31
MSH6P52701 AL445189.1-201ENST00000405722 338 ntBASIC6.86□□□□□ -1.31
MSH6P52701 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.86□□□□□ -1.31
MSH6P52701 AL358176.3-201ENST00000420757 454 ntBASIC6.86□□□□□ -1.31
MSH6P52701 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.86□□□□□ -1.31
MSH6P52701 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC6.86□□□□□ -1.31
MSH6P52701 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC6.86□□□□□ -1.31
MSH6P52701 TAAR4P-201ENST00000454843 1039 ntBASIC6.86□□□□□ -1.31
MSH6P52701 PPP1R11P1-201ENST00000486095 376 ntBASIC6.86□□□□□ -1.31
MSH6P52701 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC6.86□□□□□ -1.31
MSH6P52701 AC093815.1-201ENST00000508637 280 ntBASIC6.86□□□□□ -1.31
MSH6P52701 HMGN1P9-201ENST00000515212 298 ntBASIC6.86□□□□□ -1.31
MSH6P52701 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.86□□□□□ -1.31
MSH6P52701 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC6.86□□□□□ -1.31
MSH6P52701 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC6.86□□□□□ -1.31
MSH6P52701 FAM27B-201ENST00000610601 213 ntBASIC6.86□□□□□ -1.31
MSH6P52701 AC010632.3-201ENST00000611377 369 ntBASIC6.86□□□□□ -1.31
MSH6P52701 PDCD6IPP1-202ENST00000622242 1064 ntBASIC6.86□□□□□ -1.31
MSH6P52701 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.86□□□□□ -1.31
MSH6P52701 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.86□□□□□ -1.31
MSH6P52701 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSH6P52701 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.86□□□□□ -1.31
MSH6P52701 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSH6P52701 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.86□□□□□ -1.31
MSH6P52701 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
MSH6P52701 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
MSH6P52701 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.86□□□□□ -1.31
MSH6P52701 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC6.86□□□□□ -1.31
MSH6P52701 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.86□□□□□ -1.31
MSH6P52701 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
MSH6P52701 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
MSH6P52701 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSH6P52701 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
MSH6P52701 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSH6P52701 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC6.85□□□□□ -1.31
MSH6P52701 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSH6P52701 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSH6P52701 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
MSH6P52701 SNORA70.10-201ENST00000384515 134 ntBASIC6.85□□□□□ -1.31
MSH6P52701 RNU11-201ENST00000387069 134 ntBASIC6.85□□□□□ -1.31
MSH6P52701 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
MSH6P52701 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC6.85□□□□□ -1.31
MSH6P52701 UQCRBP1-201ENST00000421129 336 ntBASIC6.85□□□□□ -1.31
MSH6P52701 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC6.85□□□□□ -1.31
MSH6P52701 AC138761.5-201ENST00000433967 325 ntBASIC6.85□□□□□ -1.31
MSH6P52701 CYCSP11-201ENST00000436426 315 ntBASIC6.85□□□□□ -1.31
MSH6P52701 Z95327.1-201ENST00000446082 482 ntBASIC6.85□□□□□ -1.31
MSH6P52701 snoU13.22-201ENST00000459428 104 ntBASIC6.85□□□□□ -1.31
MSH6P52701 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.85□□□□□ -1.31
MSH6P52701 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.85□□□□□ -1.31
MSH6P52701 AC091167.1-201ENST00000492017 396 ntBASIC6.85□□□□□ -1.31
MSH6P52701 AC007016.1-201ENST00000512110 244 ntBASIC6.85□□□□□ -1.31
MSH6P52701 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC6.85□□□□□ -1.31
MSH6P52701 AC079064.1-201ENST00000528365 362 ntBASIC6.85□□□□□ -1.31
MSH6P52701 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
MSH6P52701 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC6.85□□□□□ -1.31
MSH6P52701 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC6.85□□□□□ -1.31
MSH6P52701 AL360012.1-201ENST00000602813 131 ntBASIC6.85□□□□□ -1.31
MSH6P52701 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.85□□□□□ -1.31
MSH6P52701 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.85□□□□□ -1.31
MSH6P52701 OR8B1P-202ENST00000641132 1178 ntBASIC6.85□□□□□ -1.31
MSH6P52701 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.85□□□□□ -1.31
MSH6P52701 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.85□□□□□ -1.31
MSH6P52701 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSH6P52701 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSH6P52701 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSH6P52701 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC6.84□□□□□ -1.31
MSH6P52701 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSH6P52701 RPL17P50-201ENST00000396131 546 ntBASIC6.84□□□□□ -1.31
MSH6P52701 AL158827.1-201ENST00000416300 391 ntBASIC6.84□□□□□ -1.31
MSH6P52701 ATG4AP1-201ENST00000416893 538 ntBASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms