Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 AC012078.1-201ENST00000405035 1646 ntBASIC4.86□□□□□ -1.63
SOX3P41225 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 AC025574.1-201ENST00000554784 1653 ntBASIC4.86□□□□□ -1.63
SOX3P41225 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SOX3P41225 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.86□□□□□ -1.63
SOX3P41225 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.86□□□□□ -1.63
SOX3P41225 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SOX3P41225 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
SOX3P41225 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SOX3P41225 SMG1P7-201ENST00000565246 2704 ntBASIC4.85□□□□□ -1.63
SOX3P41225 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SOX3P41225 RNU4-39P-201ENST00000362455 127 ntBASIC4.85□□□□□ -1.63
SOX3P41225 SNORA17.1-201ENST00000362945 126 ntBASIC4.85□□□□□ -1.63
SOX3P41225 RNA5SP507-201ENST00000363603 121 ntBASIC4.85□□□□□ -1.63
SOX3P41225 SNORA27.3-201ENST00000364937 134 ntBASIC4.85□□□□□ -1.63
SOX3P41225 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.85□□□□□ -1.63
SOX3P41225 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC4.85□□□□□ -1.63
SOX3P41225 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.85□□□□□ -1.63
SOX3P41225 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.85□□□□□ -1.63
SOX3P41225 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.85□□□□□ -1.63
SOX3P41225 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.85□□□□□ -1.63
SOX3P41225 PTMAP6-201ENST00000439110 327 ntBASIC4.85□□□□□ -1.63
SOX3P41225 AC079168.1-201ENST00000458741 345 ntBASIC4.85□□□□□ -1.63
SOX3P41225 AC009127.1-201ENST00000467090 155 ntBASIC4.85□□□□□ -1.63
SOX3P41225 RPSAP50-201ENST00000481955 852 ntBASIC4.85□□□□□ -1.63
SOX3P41225 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.85□□□□□ -1.63
SOX3P41225 SNRPCP2-201ENST00000504370 475 ntBASIC4.85□□□□□ -1.63
SOX3P41225 GTF2F2P1-201ENST00000511083 675 ntBASIC4.85□□□□□ -1.63
SOX3P41225 RNU6-319P-201ENST00000516025 108 ntBASIC4.85□□□□□ -1.63
SOX3P41225 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.85□□□□□ -1.63
SOX3P41225 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.85□□□□□ -1.63
SOX3P41225 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC4.85□□□□□ -1.63
SOX3P41225 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.85□□□□□ -1.63
SOX3P41225 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.85□□□□□ -1.63
SOX3P41225 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.85□□□□□ -1.63
SOX3P41225 TMF1P1-201ENST00000576058 373 ntBASIC4.85□□□□□ -1.63
SOX3P41225 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC4.85□□□□□ -1.63
SOX3P41225 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.85□□□□□ -1.63
SOX3P41225 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.85□□□□□ -1.63
SOX3P41225 AC006363.1-201ENST00000603806 463 ntBASIC4.85□□□□□ -1.63
SOX3P41225 TAS2R6P-201ENST00000605022 826 ntBASIC4.85□□□□□ -1.63
SOX3P41225 AL021707.7-201ENST00000607991 416 ntBASIC4.85□□□□□ -1.63
SOX3P41225 AL356490.1-201ENST00000623079 479 ntBASIC4.85□□□□□ -1.63
SOX3P41225 LINC00216-201ENST00000623548 1126 ntBASIC4.85□□□□□ -1.63
SOX3P41225 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.85□□□□□ -1.63
SOX3P41225 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.85□□□□□ -1.63
SOX3P41225 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SOX3P41225 AC079298.1-201ENST00000625026 1619 ntBASIC4.85□□□□□ -1.63
SOX3P41225 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SOX3P41225 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SOX3P41225 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SOX3P41225 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
SOX3P41225 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SOX3P41225 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SOX3P41225 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SOX3P41225 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SOX3P41225 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SOX3P41225 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.84□□□□□ -1.63
SOX3P41225 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SOX3P41225 SMG1P4-204ENST00000523028 4131 ntBASIC4.84□□□□□ -1.63
SOX3P41225 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SOX3P41225 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.84□□□□□ -1.63
SOX3P41225 RNU1-106P-201ENST00000384382 164 ntBASIC4.84□□□□□ -1.63
SOX3P41225 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SOX3P41225 NPM1P40-201ENST00000412758 733 ntBASIC4.84□□□□□ -1.63
SOX3P41225 MTCO1P51-201ENST00000427672 1060 ntBASIC4.84□□□□□ -1.63
SOX3P41225 MTND4LP7-201ENST00000431728 294 ntBASIC4.84□□□□□ -1.63
SOX3P41225 ARL5AP3-201ENST00000439327 386 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.84□□□□□ -1.63
SOX3P41225 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.84□□□□□ -1.63
SOX3P41225 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.84□□□□□ -1.63
SOX3P41225 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.84□□□□□ -1.63
SOX3P41225 SUMO2P4-201ENST00000504193 276 ntBASIC4.84□□□□□ -1.63
SOX3P41225 GOLGA5P1-201ENST00000507317 980 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.84□□□□□ -1.63
SOX3P41225 AC147055.3-201ENST00000510547 851 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC4.84□□□□□ -1.63
SOX3P41225 SETP12-201ENST00000514068 805 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AP006245.2-201ENST00000522004 300 ntBASIC4.84□□□□□ -1.63
SOX3P41225 OR4A46P-201ENST00000527255 933 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AC134349.2-201ENST00000535136 910 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.84□□□□□ -1.63
SOX3P41225 HMGN2P6-201ENST00000551091 273 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AC006349.1-201ENST00000555526 235 ntBASIC4.84□□□□□ -1.63
SOX3P41225 LINC00557-201ENST00000563184 1279 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.84□□□□□ -1.63
SOX3P41225 AC022884.2-201ENST00000578535 580 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.84□□□□□ -1.63
SOX3P41225 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SOX3P41225 QTRT1P1-201ENST00000604344 1078 ntBASIC4.84□□□□□ -1.63
SOX3P41225 AC074276.2-201ENST00000619891 348 ntBASIC4.84□□□□□ -1.63
SOX3P41225 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.84□□□□□ -1.63
SOX3P41225 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.84□□□□□ -1.63
SOX3P41225 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SOX3P41225 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms