Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RPSAP39-201ENST00000467439 883 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 RPL17P2-201ENST00000491913 451 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC024558.1-201ENST00000505008 528 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 GUSBP9-201ENST00000510138 584 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC048346.1-201ENST00000510247 144 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC009812.2-201ENST00000517657 457 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC011853.1-201ENST00000518911 454 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AP003467.2-201ENST00000520175 319 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 CARSP2-201ENST00000520688 277 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC6.46□□□□□ -1.38
COL8A1P27658 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC6.46□□□□□ -1.38
COL8A1P27658 RGS5-218ENST00000526176 574 ntTSL 4 BASIC6.46□□□□□ -1.38
COL8A1P27658 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC6.46□□□□□ -1.38
COL8A1P27658 PCNAP4-201ENST00000532690 730 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC6.46□□□□□ -1.38
COL8A1P27658 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.46□□□□□ -1.38
COL8A1P27658 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.46□□□□□ -1.38
COL8A1P27658 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.46□□□□□ -1.38
COL8A1P27658 AL163153.1-201ENST00000554223 283 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.46□□□□□ -1.38
COL8A1P27658 ZNF322P1-201ENST00000568013 1209 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC005387.1-201ENST00000597837 352 ntTSL 3 BASIC6.46□□□□□ -1.38
COL8A1P27658 AC011453.2-201ENST00000603737 729 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6.46□□□□□ -1.38
COL8A1P27658 U47924.1-201ENST00000606539 434 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC090510.2-201ENST00000617465 629 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC092650.2-201ENST00000619984 902 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AL591926.1-201ENST00000620542 217 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC6.46□□□□□ -1.38
COL8A1P27658 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC6.46□□□□□ -1.38
COL8A1P27658 AC231657.1-201ENST00000624313 397 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.46□□□□□ -1.38
COL8A1P27658 AC135068.12-201ENST00000637370 931 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL8A1P27658 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL8A1P27658 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.46□□□□□ -1.38
COL8A1P27658 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC6.46□□□□□ -1.38
COL8A1P27658 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC6.46□□□□□ -1.38
COL8A1P27658 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL8A1P27658 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL8A1P27658 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL8A1P27658 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL8A1P27658 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC6.46□□□□□ -1.38
COL8A1P27658 ATM-215ENST00000530958 5718 ntTSL 2 BASIC6.46□□□□□ -1.38
COL8A1P27658 CCDC77-202ENST00000412006 2253 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.38
COL8A1P27658 ERBB3-221ENST00000553131 3237 ntTSL 2 BASIC6.46□□□□□ -1.38
COL8A1P27658 PRKCQ-204ENST00000610727 3077 ntTSL 5 BASIC6.46□□□□□ -1.38
COL8A1P27658 OR2A20P-201ENST00000479887 2913 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC6.46□□□□□ -1.38
COL8A1P27658 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL8A1P27658 AL031123.3-201ENST00000623345 1837 ntBASIC6.46□□□□□ -1.38
COL8A1P27658 CD86-201ENST00000264468 2634 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
COL8A1P27658 AL049646.1-201ENST00000457009 2490 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 BRD8-203ENST00000402931 2982 ntTSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 GLS2-215ENST00000539272 2174 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 MAPK10-296ENST00000641283 2826 ntAPPRIS P2 BASIC6.45□□□□□ -1.38
COL8A1P27658 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 AOAH-210ENST00000617267 2398 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 IL31RA-205ENST00000396836 2426 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 NBPF8-201ENST00000583271 5330 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 PRLR-202ENST00000310101 1297 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 BSPH1-201ENST00000344839 654 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC6.45□□□□□ -1.38
COL8A1P27658 SSX6-201ENST00000376932 562 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 RNU1-39P-201ENST00000383897 165 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 RNU6-533P-201ENST00000384144 107 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 MIR142-201ENST00000384835 87 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 RPL7P58-201ENST00000402913 758 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AL353133.1-201ENST00000407695 401 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 RNU6-1148P-201ENST00000410992 104 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC010385.1-201ENST00000412374 256 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 MRPL50P2-201ENST00000416821 482 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC009228.1-203ENST00000430105 432 ntTSL 3 BASIC6.45□□□□□ -1.38
COL8A1P27658 AL137792.2-201ENST00000443484 235 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.45□□□□□ -1.38
COL8A1P27658 AC012512.1-201ENST00000446594 718 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 RNU6-261P-201ENST00000459506 102 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 RPS27AP17-201ENST00000463344 455 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 RN7SL393P-201ENST00000463588 296 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC6.45□□□□□ -1.38
COL8A1P27658 MYL6P4-201ENST00000477911 453 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC099521.1-201ENST00000482557 334 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC104564.1-201ENST00000493028 407 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC023194.1-201ENST00000493084 308 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 SUMO2P7-201ENST00000511179 285 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 SNORA25.17-201ENST00000517184 124 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC009902.1-201ENST00000519351 183 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC6.45□□□□□ -1.38
COL8A1P27658 COPS8P3-201ENST00000526024 482 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 OR5BK1P-201ENST00000550421 823 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms