Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS4AQ9UN37 AC136428.4-201ENST00000634254 1155 ntBASIC5.55□□□□□ -1.52
VPS4AQ9UN37 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
VPS4AQ9UN37 AC245100.2-201ENST00000454544 1679 ntBASIC5.55□□□□□ -1.52
VPS4AQ9UN37 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS4AQ9UN37 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS4AQ9UN37 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS4AQ9UN37 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS4AQ9UN37 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS4AQ9UN37 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS4AQ9UN37 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 FBXL21-201ENST00000297158 1305 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 SNORD56.4-201ENST00000363883 71 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 HMGB1P10-201ENST00000395823 563 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 NPM1P4-201ENST00000414095 812 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AL121878.1-201ENST00000418638 859 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 NPM1P22-201ENST00000427761 952 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 BX323845.3-201ENST00000428215 527 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 ELOCP11-201ENST00000436690 332 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 ELOCP16-201ENST00000444494 332 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 MTND1P33-201ENST00000446251 917 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 EXOSC3P1-201ENST00000448649 500 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC093720.1-201ENST00000505681 714 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 PCNAP4-201ENST00000532690 730 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 NPM1P35-201ENST00000533043 868 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AP000919.1-202ENST00000581139 1264 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 MIR4505-201ENST00000582238 73 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC099785.1-201ENST00000605697 437 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC009974.1-201ENST00000608881 455 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AL021918.2-201ENST00000613415 194 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC118658.2-201ENST00000618697 459 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC018445.2-201ENST00000622987 260 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 CASC19-222ENST00000641321 1173 ntBASIC5.54□□□□□ -1.52
VPS4AQ9UN37 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VPS4AQ9UN37 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.53□□□□□ -1.52
VPS4AQ9UN37 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 AC114774.1-201ENST00000507410 1770 ntBASIC5.53□□□□□ -1.52
VPS4AQ9UN37 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 AC027088.4-201ENST00000611559 1947 ntBASIC5.53□□□□□ -1.52
VPS4AQ9UN37 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 SNORA79B-201ENST00000410557 148 ntBASIC5.53□□□□□ -1.52
VPS4AQ9UN37 RN7SKP279-201ENST00000411383 298 ntBASIC5.53□□□□□ -1.52
VPS4AQ9UN37 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS4AQ9UN37 XKRYP4-201ENST00000414395 483 ntBASIC5.53□□□□□ -1.52
VPS4AQ9UN37 RPA2P2-201ENST00000419698 796 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms