Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 THSD7B-201ENST00000272643 5939 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 MIR634-201ENST00000385208 97 ntBASIC4.62□□□□□ -1.67
VPS13AQ96RL7 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.62□□□□□ -1.67
VPS13AQ96RL7 BOLA3P4-201ENST00000418151 400 ntBASIC4.62□□□□□ -1.67
VPS13AQ96RL7 TCEA1P3-201ENST00000443005 880 ntBASIC4.62□□□□□ -1.67
VPS13AQ96RL7 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.62□□□□□ -1.67
VPS13AQ96RL7 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 OR2BH1P-201ENST00000608850 864 ntBASIC4.62□□□□□ -1.67
VPS13AQ96RL7 uc_338.7-201ENST00000621834 124 ntBASIC4.62□□□□□ -1.67
VPS13AQ96RL7 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 AL033543.1-201ENST00000623440 13454 ntBASIC4.62□□□□□ -1.67
VPS13AQ96RL7 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 NACA-203ENST00000454682 6629 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS13AQ96RL7 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 COX6CP15-201ENST00000426313 211 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 RPL21P89-201ENST00000444021 467 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 RN7SKP83-201ENST00000516512 178 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 CASC19-243ENST00000641588 1546 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AC002525.1-201ENST00000624392 1622 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 RN7SKP267-201ENST00000410381 285 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 FTH1P16-201ENST00000435241 552 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AC096577.2-201ENST00000611455 153 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AL022401.1-201ENST00000619498 108 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 ZNF137P-201ENST00000456718 1920 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AL583835.1-201ENST00000399570 407 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AL132838.2-201ENST00000492041 314 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 OR5D2P-201ENST00000524390 911 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AC243960.7-201ENST00000623532 707 ntBASIC4.61□□□□□ -1.67
VPS13AQ96RL7 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS13AQ96RL7 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 RN7SKP16-201ENST00000410180 299 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms