Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 RN7SKP62-201ENST00000384539 329 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 RPS3AP5-201ENST00000389400 821 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 CIR1P3-201ENST00000405137 479 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 MIR1204-201ENST00000408388 67 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 RNU2-18P-201ENST00000411224 162 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 NPM1P4-201ENST00000414095 812 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 SPA17P1-201ENST00000416656 452 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 USP9YP36-201ENST00000424581 829 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 MTCO2P19-201ENST00000427513 598 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL645936.2-201ENST00000430565 928 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL121601.2-201ENST00000438019 707 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL450263.2-201ENST00000439400 589 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 FABP3P2-201ENST00000453169 399 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 SBDSP1-204ENST00000453858 737 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 RPL23AP8-201ENST00000479812 475 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 RPS3AP14-201ENST00000483907 780 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 MTND1P3-201ENST00000484956 952 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 MAST4-IT1-201ENST00000514241 658 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 HSPE1P3-201ENST00000559254 309 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL031846.1-201ENST00000560933 314 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL157394.1-201ENST00000562983 1224 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 ULK4P1-202ENST00000565174 503 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL391840.1-201ENST00000571144 367 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC005070.2-201ENST00000604391 260 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC090948.2-201ENST00000607363 564 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL359314.1-201ENST00000616913 261 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC129915.3-201ENST00000634128 948 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 BIN2P1-201ENST00000504996 1530 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 SORBS2-221ENST00000437304 3381 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC079178.2-201ENST00000439323 1624 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC012213.2-201ENST00000562917 4597 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 RPL10P16-201ENST00000325000 645 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 U3.14-201ENST00000365363 227 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 FAUP2-201ENST00000394301 401 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC016769.3-201ENST00000396562 315 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ARF4P3-201ENST00000397387 509 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 CALM2P3-201ENST00000400429 449 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 HMGB1P17-201ENST00000403495 628 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 RN7SKP266-201ENST00000410232 287 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms