Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 RNA5SP339-201ENST00000390987 122 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 SNORD65-201ENST00000391079 73 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 SETP15-201ENST00000412724 337 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC007738.1-201ENST00000413892 348 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AL133325.1-201ENST00000421090 382 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC099336.2-201ENST00000422457 254 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 HSPE1P16-201ENST00000426640 348 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC009238.2-201ENST00000431026 355 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 RPL31P20-201ENST00000449593 360 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC099560.2-201ENST00000457554 255 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 NPM1P29-201ENST00000483112 803 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC023424.1-201ENST00000496058 459 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 IGHV3-63-201ENST00000518422 341 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC012400.1-201ENST00000518452 381 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AL049874.4-201ENST00000557593 255 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AP001542.1-201ENST00000591314 200 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC243960.7-201ENST00000623532 707 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 AC092747.4-201ENST00000620519 1861 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 KARSP1-201ENST00000451871 1752 ntBASIC5.19□□□□□ -1.58
VPS39Q96JC1 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS39Q96JC1 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS39Q96JC1 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS39Q96JC1 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS39Q96JC1 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC063976.2-201ENST00000425667 3556 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 CASC19-284ENST00000642142 1868 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 HSPD1P11-201ENST00000508643 1702 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS39Q96JC1 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS39Q96JC1 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS39Q96JC1 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS39Q96JC1 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 RNU1-77P-201ENST00000390868 162 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AL390316.1-201ENST00000406279 553 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AL034374.1-201ENST00000406329 351 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 FAM96AP1-201ENST00000430879 482 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 FCF1P7-201ENST00000451185 558 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 CLIC4P1-201ENST00000453177 535 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AL354710.1-201ENST00000453641 246 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AL356390.1-201ENST00000455684 397 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 SETP20-201ENST00000457046 852 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 HMGN1P8-201ENST00000463578 288 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 STRADBP1-201ENST00000478954 1281 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 RPL7P51-201ENST00000490532 749 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 RN7SL466P-201ENST00000497546 295 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS39Q96JC1 AP005262.1-201ENST00000582646 997 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC084373.1-201ENST00000603311 235 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 BNIP3P35-201ENST00000604530 490 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC104695.2-201ENST00000605056 775 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC018695.5-201ENST00000605872 315 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC108359.1-201ENST00000616451 1211 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms