Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 OR8I1P-201ENST00000529291 931 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC096996.1-201ENST00000563813 325 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MIR4260-201ENST00000583107 67 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 NANOGP3-201ENST00000605855 286 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC021755.4-201ENST00000616620 456 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AL035661.1-201ENST00000620459 1144 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 AC000095.2-202ENST00000637415 154 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 MIR193BHG-214ENST00000641765 509 ntBASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD3Q3KNS1 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.52
PTCHD3Q3KNS1 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
PTCHD3Q3KNS1 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
PTCHD3Q3KNS1 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
PTCHD3Q3KNS1 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
PTCHD3Q3KNS1 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 OR7E101P-201ENST00000400428 513 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AL603865.2-201ENST00000401679 213 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AL049545.1-201ENST00000401856 572 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 HMGB1P13-201ENST00000406019 642 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 RN7SKP229-201ENST00000410465 302 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC010385.1-201ENST00000412374 256 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 PTP4A1P1-201ENST00000420539 515 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC079355.1-201ENST00000421770 223 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 HSPE1P16-201ENST00000426640 348 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 ZNF886P-201ENST00000450781 723 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 MEMO1P4-201ENST00000453590 386 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 DUTP1-201ENST00000493631 470 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC021106.1-201ENST00000509020 1058 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 CYCSP22-201ENST00000517555 339 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC009097.3-201ENST00000563557 1018 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 SNORD95-201ENST00000579879 68 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 DUXAP3-201ENST00000603616 594 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AP000894.4-201ENST00000610185 483 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 MIR6886-201ENST00000619864 61 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AP002791.1-201ENST00000623291 381 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC004076.2-201ENST00000620532 3323 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC107021.2-201ENST00000567714 2095 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AC004656.1-201ENST00000568479 4951 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 AL121839.2-201ENST00000565058 6943 ntBASIC5.58□□□□□ -1.52
PTCHD3Q3KNS1 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms