Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC2.91□□□□□ -1.94
HSPG2P98160 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC2.91□□□□□ -1.94
HSPG2P98160 AC079804.1-201ENST00000461922 436 ntBASIC2.91□□□□□ -1.94
HSPG2P98160 AC022336.1-201ENST00000475510 337 ntBASIC2.91□□□□□ -1.94
HSPG2P98160 RN7SL810P-201ENST00000493031 276 ntBASIC2.91□□□□□ -1.94
HSPG2P98160 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
HSPG2P98160 RN7SKP13-201ENST00000515933 244 ntBASIC2.91□□□□□ -1.94
HSPG2P98160 AC023632.4-201ENST00000517783 191 ntBASIC2.91□□□□□ -1.94
HSPG2P98160 OR5D2P-201ENST00000524390 911 ntBASIC2.91□□□□□ -1.94
HSPG2P98160 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC2.91□□□□□ -1.94
HSPG2P98160 AC012468.1-201ENST00000604888 430 ntBASIC2.91□□□□□ -1.94
HSPG2P98160 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC2.91□□□□□ -1.94
HSPG2P98160 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC2.91□□□□□ -1.94
HSPG2P98160 MIR3653-201ENST00000625572 110 ntBASIC2.91□□□□□ -1.94
HSPG2P98160 AC140479.6-201ENST00000633535 357 ntBASIC2.91□□□□□ -1.94
HSPG2P98160 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
HSPG2P98160 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HSPG2P98160 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HSPG2P98160 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
HSPG2P98160 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC2.9□□□□□ -1.94
HSPG2P98160 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HSPG2P98160 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HSPG2P98160 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC2.9□□□□□ -1.94
HSPG2P98160 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.94
HSPG2P98160 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
HSPG2P98160 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC2.9□□□□□ -1.94
HSPG2P98160 SNORA73.2-201ENST00000364946 201 ntBASIC2.9□□□□□ -1.94
HSPG2P98160 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC2.9□□□□□ -1.94
HSPG2P98160 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC2.9□□□□□ -1.94
HSPG2P98160 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC2.9□□□□□ -1.94
HSPG2P98160 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC2.9□□□□□ -1.94
HSPG2P98160 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC2.9□□□□□ -1.94
HSPG2P98160 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC2.9□□□□□ -1.94
HSPG2P98160 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC2.9□□□□□ -1.94
HSPG2P98160 RN7SL435P-201ENST00000584418 282 ntBASIC2.9□□□□□ -1.94
HSPG2P98160 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC2.9□□□□□ -1.94
HSPG2P98160 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC2.9□□□□□ -1.94
HSPG2P98160 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
HSPG2P98160 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
HSPG2P98160 CASC19-243ENST00000641588 1546 ntBASIC2.9□□□□□ -1.94
HSPG2P98160 SOCS5P3-201ENST00000425115 1576 ntBASIC2.9□□□□□ -1.94
HSPG2P98160 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
HSPG2P98160 AL355488.2-201ENST00000609909 2850 ntBASIC2.9□□□□□ -1.94
HSPG2P98160 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.94
HSPG2P98160 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
HSPG2P98160 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 UNC79-205ENST00000555664 8484 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
HSPG2P98160 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 RNA5SP432-201ENST00000362480 116 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 PTMAP2-201ENST00000397627 327 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 DNAJA1P3-201ENST00000399417 1194 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 COX6CP15-201ENST00000426313 211 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC2.9□□□□□ -1.95
HSPG2P98160 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC2.9□□□□□ -1.95
HSPG2P98160 RNA5SP360-201ENST00000516555 118 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC2.9□□□□□ -1.95
HSPG2P98160 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC2.9□□□□□ -1.95
HSPG2P98160 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC2.9□□□□□ -1.95
HSPG2P98160 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
HSPG2P98160 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 WDFY2-201ENST00000298125 9321 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
HSPG2P98160 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 ZNF137P-201ENST00000456718 1920 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HSPG2P98160 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
HSPG2P98160 AC021146.4-201ENST00000309229 279 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 AC116562.1-201ENST00000485355 781 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 RPS27AP13-201ENST00000498403 237 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC2.9□□□□□ -1.95
HSPG2P98160 AP000619.3-201ENST00000535634 1127 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC2.9□□□□□ -1.95
HSPG2P98160 AC007342.8-201ENST00000623278 678 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
HSPG2P98160 AL359195.2-201ENST00000623657 4412 ntBASIC2.9□□□□□ -1.95
HSPG2P98160 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
HSPG2P98160 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
HSPG2P98160 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
HSPG2P98160 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HSPG2P98160 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
HSPG2P98160 MIR218-2-201ENST00000385006 110 ntBASIC2.89□□□□□ -1.95
HSPG2P98160 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms