Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXA3P55318 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC3.69□□□□□ -1.82
FOXA3P55318 DYNLL1P4-201ENST00000549314 266 ntBASIC3.69□□□□□ -1.82
FOXA3P55318 SMARCE1P3-201ENST00000553649 1231 ntBASIC3.69□□□□□ -1.82
FOXA3P55318 AL049872.1-201ENST00000556323 322 ntBASIC3.69□□□□□ -1.82
FOXA3P55318 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA3P55318 AC002310.3-201ENST00000569728 723 ntBASIC3.69□□□□□ -1.82
FOXA3P55318 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXA3P55318 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXA3P55318 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA3P55318 AC005479.3-201ENST00000602790 431 ntBASIC3.69□□□□□ -1.82
FOXA3P55318 AC087468.1-201ENST00000604365 630 ntBASIC3.69□□□□□ -1.82
FOXA3P55318 AC000068.2-201ENST00000608816 460 ntBASIC3.69□□□□□ -1.82
FOXA3P55318 AC079298.2-201ENST00000623885 459 ntBASIC3.69□□□□□ -1.82
FOXA3P55318 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
FOXA3P55318 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
FOXA3P55318 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
FOXA3P55318 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
FOXA3P55318 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
FOXA3P55318 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
FOXA3P55318 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
FOXA3P55318 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA3P55318 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
FOXA3P55318 AC106872.5-201ENST00000508856 1416 ntBASIC3.69□□□□□ -1.82
FOXA3P55318 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
FOXA3P55318 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
FOXA3P55318 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
FOXA3P55318 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.69□□□□□ -1.82
FOXA3P55318 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 LDHAL6CP-202ENST00000550738 3224 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 ECM1P2-201ENST00000503354 1577 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 IRF5P1-201ENST00000504852 2164 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA3P55318 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXA3P55318 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 RPS24P12-201ENST00000402084 394 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC3.68□□□□□ -1.82
FOXA3P55318 HDGFP1-201ENST00000405943 252 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA3P55318 RGS17P1-201ENST00000423358 553 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA3P55318 AC004938.1-201ENST00000438468 308 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 TIMM8BP2-201ENST00000445940 251 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 CTSLP6-201ENST00000458273 1002 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 RN7SL41P-201ENST00000476144 297 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 SSR3-206ENST00000476217 807 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA3P55318 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 RFPL4AP3-201ENST00000515267 345 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA3P55318 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA3P55318 CYCSP28-201ENST00000534284 321 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 AC006512.2-201ENST00000543250 486 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXA3P55318 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA3P55318 AC122134.1-201ENST00000565664 1104 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 CCDC58P1-201ENST00000578567 430 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
FOXA3P55318 RPL26P30-202ENST00000602923 645 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 RPSAP73-201ENST00000614820 330 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 AL683826.1-201ENST00000624104 627 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
FOXA3P55318 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA3P55318 AC009643.2-201ENST00000603543 1448 ntBASIC3.68□□□□□ -1.82
FOXA3P55318 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.68□□□□□ -1.82
FOXA3P55318 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXA3P55318 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 RNA5SP46-201ENST00000362370 120 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 RNU1-108P-201ENST00000362556 161 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 SSX3-202ENST00000376893 800 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXA3P55318 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 AL596448.1-201ENST00000415024 392 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXA3P55318 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXA3P55318 AC093155.2-201ENST00000420734 937 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 RPL34P3-201ENST00000421454 338 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 EIF4EP1-201ENST00000422311 642 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 PDSS1P1-201ENST00000422953 1114 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 TDGF1P1-201ENST00000445734 527 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXA3P55318 AC093166.3-201ENST00000448785 303 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 AL445665.1-202ENST00000452436 324 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXA3P55318 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXA3P55318 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXA3P55318 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXA3P55318 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA3P55318 RPL7P6-201ENST00000480903 738 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 UBA52P3-201ENST00000491303 382 ntBASIC3.67□□□□□ -1.82
FOXA3P55318 AC026688.1-201ENST00000520639 1168 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms