Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.29□□□□□ -1.56
HOXA9P31269 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
HOXA9P31269 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA9P31269 AC026951.1-201ENST00000559530 2459 ntBASIC5.29□□□□□ -1.56
HOXA9P31269 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXA9P31269 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXA9P31269 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA9P31269 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 RNU1-32P-201ENST00000363937 159 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 SNORA2.3-201ENST00000383920 135 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 RNA5SP187-201ENST00000384400 119 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 ATP5HP3-201ENST00000396994 486 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 SNORA77-201ENST00000408716 125 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 AC234781.4-201ENST00000419384 244 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXA9P31269 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXA9P31269 BX842559.2-201ENST00000451418 605 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 AL356390.1-201ENST00000455684 397 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 RN7SL481P-201ENST00000477764 299 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 NPM1P28-201ENST00000492269 840 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 MRPS33P2-201ENST00000507850 322 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 OR5AN2P-201ENST00000534535 896 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXA9P31269 AC002069.2-201ENST00000603580 883 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 AC005377.1-201ENST00000605126 456 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXA9P31269 AC010632.3-201ENST00000611377 369 ntBASIC5.28□□□□□ -1.56
HOXA9P31269 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXA9P31269 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HOXA9P31269 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HOXA9P31269 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXA9P31269 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA9P31269 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 MTCO1P46-201ENST00000451639 1491 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 AF186996.5-201ENST00000418098 904 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.27□□□□□ -1.57
HOXA9P31269 BX119904.3-201ENST00000428194 957 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA9P31269 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA9P31269 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA9P31269 AC090804.1-201ENST00000448870 490 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 SLC25A18P1-201ENST00000449385 454 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA9P31269 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA9P31269 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA9P31269 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA9P31269 RAB9BP1-201ENST00000519581 626 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA9P31269 AC018552.1-201ENST00000562099 811 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 TVP23CP2-201ENST00000571473 623 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.27□□□□□ -1.57
HOXA9P31269 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.27□□□□□ -1.57
HOXA9P31269 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 AC019193.2-201ENST00000610012 634 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 MIR378J-201ENST00000611988 109 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 MIR7703-201ENST00000620784 77 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 AC092376.2-201ENST00000622621 4116 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 CR381572.2-201ENST00000624852 397 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 AC099654.2-201ENST00000433031 1980 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
HOXA9P31269 TTC39DP-201ENST00000416781 1688 ntBASIC5.27□□□□□ -1.57
HOXA9P31269 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXA9P31269 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA9P31269 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA9P31269 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA9P31269 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA9P31269 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXA9P31269 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA9P31269 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXA9P31269 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms