Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A5P29400 SALL4P2-201ENST00000423288 2910 ntBASIC5.74□□□□□ -1.49
COL4A5P29400 AC025574.1-201ENST00000554784 1653 ntBASIC5.74□□□□□ -1.49
COL4A5P29400 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A5P29400 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.74□□□□□ -1.49
COL4A5P29400 UGT2B26P-201ENST00000508672 1613 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
COL4A5P29400 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A5P29400 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A5P29400 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A5P29400 RNA5SP241-201ENST00000391326 114 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 RNA5SP317-201ENST00000410176 116 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 RNA5SP311-201ENST00000411290 116 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.73□□□□□ -1.49
COL4A5P29400 RPS17P8-201ENST00000434525 335 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.73□□□□□ -1.49
COL4A5P29400 RNA5SP315-201ENST00000516340 116 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 RNA5SP312-201ENST00000517068 116 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.73□□□□□ -1.49
COL4A5P29400 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A5P29400 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.73□□□□□ -1.49
COL4A5P29400 AC011477.5-201ENST00000586571 259 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 AC090948.2-201ENST00000607363 564 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 AL035461.2-201ENST00000619201 524 ntBASIC5.73□□□□□ -1.49
COL4A5P29400 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A5P29400 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A5P29400 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A5P29400 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC5.73□□□□□ -1.49
COL4A5P29400 AC021146.4-201ENST00000309229 279 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 QRSL1P2-201ENST00000418582 964 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.72□□□□□ -1.49
COL4A5P29400 BMS1P19-201ENST00000433925 393 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A5P29400 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A5P29400 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.72□□□□□ -1.49
COL4A5P29400 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A5P29400 RN7SKP67-201ENST00000515905 235 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A5P29400 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A5P29400 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 RN7SL652P-201ENST00000577769 300 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 AC025857.2-201ENST00000602711 238 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A5P29400 AL162574.1-201ENST00000615702 950 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A5P29400 OR8B1P-202ENST00000641132 1178 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A5P29400 AC004817.4-201ENST00000602396 3625 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A5P29400 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A5P29400 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A5P29400 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.72□□□□□ -1.49
COL4A5P29400 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A5P29400 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 RN7SKP280-201ENST00000364196 304 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 AL359837.1-201ENST00000381357 287 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A5P29400 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.72□□□□□ -1.49
COL4A5P29400 RN7SL558P-201ENST00000497468 299 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 GLRXP2-201ENST00000555594 321 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.72□□□□□ -1.49
COL4A5P29400 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 CCDC58P3-201ENST00000590792 430 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 BNIP3P33-201ENST00000598912 569 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 U3.53-201ENST00000628922 216 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A5P29400 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.72□□□□□ -1.49
COL4A5P29400 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A5P29400 AC002525.1-201ENST00000624392 1622 ntBASIC5.72□□□□□ -1.49
COL4A5P29400 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A5P29400 AL355834.1-201ENST00000556602 3965 ntBASIC5.71□□□□□ -1.49
COL4A5P29400 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A5P29400 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
COL4A5P29400 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL4A5P29400 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL4A5P29400 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.71□□□□□ -1.5
COL4A5P29400 AL137058.3-201ENST00000624531 3099 ntBASIC5.71□□□□□ -1.5
COL4A5P29400 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL4A5P29400 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL4A5P29400 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
COL4A5P29400 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A5P29400 AL356387.2-201ENST00000422272 243 ntBASIC5.71□□□□□ -1.5
COL4A5P29400 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.71□□□□□ -1.5
COL4A5P29400 PPM1AP1-201ENST00000502740 1135 ntBASIC5.71□□□□□ -1.5
COL4A5P29400 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A5P29400 RNU6-709P-201ENST00000517257 104 ntBASIC5.71□□□□□ -1.5
COL4A5P29400 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL4A5P29400 TRAV8-5-201ENST00000537369 341 ntBASIC5.71□□□□□ -1.5
COL4A5P29400 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A5P29400 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.71□□□□□ -1.5
COL4A5P29400 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms