Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AL138820.1-201ENST00000617901 5305 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC104964.3-201ENST00000606115 2860 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 TCP1P3-201ENST00000414406 1498 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 Y_RNA.62-201ENST00000362840 99 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 BMS1P3-201ENST00000372011 932 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 HYALP1-201ENST00000417674 1279 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC090142.2-201ENST00000483263 416 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC083982.1-201ENST00000485679 344 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 USP9YP2-201ENST00000504503 1000 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AP001960.1-201ENST00000506494 658 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 GTF2F2P1-201ENST00000511083 675 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 USP9YP1-201ENST00000513521 1002 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 OR5AZ1P-201ENST00000527448 943 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 EIF4EP5-201ENST00000528228 640 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC079064.1-201ENST00000528365 362 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 HIGD1AP5-201ENST00000529959 259 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC134349.2-201ENST00000535136 910 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC009597.2-201ENST00000604659 592 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC091953.3-201ENST00000623220 236 ntBASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TM9SF3Q9HD45 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 RN7SKP104-201ENST00000362605 328 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 RNA5SP123-201ENST00000363244 119 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 SNORA51.8-201ENST00000384234 132 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AL035419.1-201ENST00000397037 564 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AC073465.2-201ENST00000440938 498 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AC092647.2-201ENST00000452998 253 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 snoU13.20-201ENST00000459180 104 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 RPS3AP41-201ENST00000462701 778 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 RN7SL423P-201ENST00000486202 304 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 BRD9P1-201ENST00000529855 560 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 RN7SL356P-201ENST00000582228 248 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 AC073869.8-201ENST00000641806 335 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 PANDAR-201ENST00000629595 1506 ntBASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
TM9SF3Q9HD45 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 148.8 ms