Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC107958.1-201ENST00000556576 290 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC122133.1-201ENST00000613964 233 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 MIR7973-1-201ENST00000614683 76 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC091931.1-201ENST00000623488 728 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AP001052.1-201ENST00000626421 99 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC015799.1-201ENST00000622996 3122 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 MTND4P31-201ENST00000425607 1343 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 RNU1-49P-201ENST00000363468 159 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 RSL24D1P4-201ENST00000400938 484 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 MOB4-205ENST00000409916 829 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL593851.1-201ENST00000426171 157 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 NPM1P22-201ENST00000427761 952 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 RPL23AP76-201ENST00000441860 458 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 RPL17P2-201ENST00000491913 451 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 CCDC11P1-201ENST00000503137 1162 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 WBP1LP4-201ENST00000505043 344 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 SNX18P24-201ENST00000505249 671 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 IMPA1P1-201ENST00000510718 842 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC109445.1-201ENST00000512356 383 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 MAST4-IT1-201ENST00000514241 658 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC084121.1-201ENST00000533882 835 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AP001858.2-201ENST00000536213 601 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL845552.1-201ENST00000556820 323 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC026826.3-201ENST00000561747 158 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AP001823.1-201ENST00000604056 1003 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC009237.12-201ENST00000604755 742 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL451074.6-201ENST00000608512 729 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL080312.2-201ENST00000613001 630 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC023509.5-201ENST00000617434 807 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms