Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 RNA5SP453-201ENST00000362503 119 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 USP9YP19-201ENST00000412165 485 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC019070.1-201ENST00000415008 1024 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AL034379.1-201ENST00000423216 253 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 ZFAND6P1-201ENST00000434138 605 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 snoU13.20-201ENST00000459180 104 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 RN7SL197P-201ENST00000466981 299 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 COL6A4P2-205ENST00000509855 506 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC091912.1-201ENST00000511351 248 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 RNU6-467P-201ENST00000517027 110 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC134349.2-201ENST00000535136 910 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 MIR3934-201ENST00000579806 107 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC104785.1-201ENST00000603220 588 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AC005252.1-201ENST00000604518 1063 ntBASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 RNU6-152P-201ENST00000384037 107 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 PEX12P1-201ENST00000400284 1048 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 DBIP1-201ENST00000401435 260 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 FABP7P2-201ENST00000429946 379 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 MTCO1P45-201ENST00000431457 267 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC099670.2-201ENST00000435130 321 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC023271.1-201ENST00000445936 1090 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC092647.2-201ENST00000452998 253 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 NFU1-207ENST00000462320 558 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC058823.1-201ENST00000485315 474 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC083982.1-201ENST00000485679 344 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 RFPL4AP3-201ENST00000515267 345 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 RNA5SP228-201ENST00000516232 133 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 OR8K2P-201ENST00000524645 927 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AP002373.2-201ENST00000541631 1060 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC074029.2-201ENST00000551045 634 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 PCNPP1-201ENST00000552501 511 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 MIR4480-201ENST00000582492 71 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 FAM25E-202ENST00000608562 189 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 EIF3FP1-201ENST00000613970 806 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 OR8G7P-201ENST00000616658 848 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AL356094.1-201ENST00000624663 1212 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 141.4 ms