Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC008147.3-201ENST00000548666 354 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 DPRXP4-201ENST00000578053 568 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 MIR3614-201ENST00000581261 86 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC138473.1-201ENST00000605717 526 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC126175.1-201ENST00000617041 758 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC103703.1-201ENST00000634783 663 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.21□□□□□ -1.57
VPS39Q96JC1 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.21□□□□□ -1.57
VPS39Q96JC1 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS39Q96JC1 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS39Q96JC1 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 RNU6-1251P-201ENST00000364502 107 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 RN7SKP124-201ENST00000364730 341 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 SNORA17A-201ENST00000391185 133 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 AL512430.2-201ENST00000406786 339 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 RN7SKP293-201ENST00000411389 296 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 MARK2P12-201ENST00000420129 585 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 AC093716.1-201ENST00000435923 377 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 RPL35AP19-201ENST00000469425 329 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 RN7SL273P-201ENST00000481561 299 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 RNA5SP373-201ENST00000517271 95 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 NPM1P35-201ENST00000533043 868 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 AC027544.3-201ENST00000535082 757 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 AC022404.1-201ENST00000555320 273 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 RNA5SP440-201ENST00000612665 119 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 AC026124.2-201ENST00000621847 656 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 MIR8080-201ENST00000622224 89 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 AC015908.5-201ENST00000623289 343 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 SNORA17.5-201ENST00000630429 132 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS39Q96JC1 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 SYT14P1-202ENST00000600441 1448 ntBASIC5.21□□□□□ -1.58
VPS39Q96JC1 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS39Q96JC1 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.58
VPS39Q96JC1 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS39Q96JC1 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS39Q96JC1 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS39Q96JC1 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS39Q96JC1 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS39Q96JC1 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS39Q96JC1 AC093719.1-202ENST00000392735 373 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 AL391422.1-201ENST00000402155 436 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 RN7SKP247-201ENST00000411094 308 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 MTND6P18-201ENST00000439477 513 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 AP000281.1-201ENST00000444036 316 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 C1DP3-201ENST00000455013 423 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 RPL7P45-201ENST00000455851 743 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 OR7L1P-201ENST00000456181 380 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 AL133445.1-201ENST00000467051 452 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 RPEP1-201ENST00000504507 658 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS39Q96JC1 RPL10P14-201ENST00000565265 298 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 AC027281.1-201ENST00000574178 758 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS39Q96JC1 AC118658.2-201ENST00000618697 459 ntBASIC5.2□□□□□ -1.58
VPS39Q96JC1 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS39Q96JC1 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS39Q96JC1 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms