Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 snoU13.20-201ENST00000459180 104 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC058823.1-201ENST00000485315 474 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC110775.1-201ENST00000513721 462 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 OR8Q1P-201ENST00000526467 655 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC024940.3-201ENST00000538551 316 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 RN7SL356P-201ENST00000582228 248 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC124856.1-201ENST00000600819 896 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC023813.4-201ENST00000607580 580 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC019131.2-201ENST00000609071 870 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AL356274.1-201ENST00000617064 410 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AL133370.2-201ENST00000619934 439 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 SCARNA15-201ENST00000607520 4325 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 HSPA8P14-201ENST00000552265 1805 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 UGT2B26P-201ENST00000508672 1613 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC087565.3-202ENST00000642085 1603 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC019072.1-201ENST00000604535 1551 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC079097.1-201ENST00000512187 1399 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 GVINP1-202ENST00000531871 7271 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 MIR133A2-201ENST00000347538 102 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 RNA5SP453-201ENST00000362503 119 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 RNU6-1251P-201ENST00000364502 107 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 MIR600-201ENST00000385007 98 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 CYB5AP4-201ENST00000396692 399 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 DBIP1-201ENST00000401435 260 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AJ239321.1-201ENST00000424255 564 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AL360081.1-201ENST00000428299 555 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC073465.2-201ENST00000440938 498 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 CCRL1P1-201ENST00000449542 1053 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 BX284632.1-201ENST00000478218 541 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC090114.3-201ENST00000479267 829 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 LARP7P4-201ENST00000481075 878 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC021106.1-201ENST00000509020 1058 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC004980.4-201ENST00000513375 203 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 OR11H3P-201ENST00000554547 982 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC009027.1-201ENST00000604510 479 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 OR51C1P-201ENST00000608504 942 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC015712.7-201ENST00000615211 635 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC099494.2-201ENST00000623371 978 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC135068.5-201ENST00000624197 983 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 AC004076.2-201ENST00000620532 3323 ntBASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
HDDC3Q8N4P3 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
HDDC3Q8N4P3 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.34□□□□□ -1.56
HDDC3Q8N4P3 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.34□□□□□ -1.56
HDDC3Q8N4P3 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
HDDC3Q8N4P3 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms